Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28l23
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0597 + 16014809-16015120,16015234-16015398,16015497-160159...    30   2.0  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    29   4.5  
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816...    29   4.5  
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    28   6.0  
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419...    28   7.9  

>05_03_0597 +
           16014809-16015120,16015234-16015398,16015497-16015957,
           16016057-16016233,16016331-16016679
          Length = 487

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/62 (33%), Positives = 25/62 (40%)
 Frame = -2

Query: 676 RSERGRERGNMLVVSSTPLFNSDQSEVAAVLRQQATPTS*VFFP*TASPDGGASSPVIRS 497
           RS RG  RG   V    P F S Q     +     +P+S    P   SP     SPV+ S
Sbjct: 42  RSPRGFSRGGARVGGGVPKFKSAQPPSLPLSPPPVSPSSYFAIPPGLSPTELLDSPVLLS 101

Query: 496 ES 491
            S
Sbjct: 102 SS 103


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +1

Query: 409 KRHPNSAVTSIQLVRQLIMLKLLKIHSPTLIE*RARTHRRQER-PSKERRPRKWAWPADV 585
           K  P+  V++  L R+L  L L K     ++E  A     Q R   KER    W   A +
Sbjct: 345 KSPPHGGVSARALERRLYEL-LQKRQQERIVELEAALDATQRRLHEKEREVVWWRDAAKL 403

Query: 586 IQQRLQTGRS*RGELRTPLTYC 651
           +  R    R     L+TP  +C
Sbjct: 404 VTHRRDESRRFARSLQTPSVHC 425


>01_06_1728 +
           39480252-39480450,39480552-39481224,39481554-39481638,
           39481731-39481820,39481953-39482026,39482421-39482505,
           39482582-39482668,39482797-39482927,39483642-39483723,
           39483810-39483857,39484793-39484912
          Length = 557

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 163 ISAYHKRLLIEFIIKLFTVHKLEVAIKYETGDIKEQHITSLPEWITVHVWVPP-CS 327
           ISA  +  +++F++ + +  +  + ++   G++ + +    P W  V +W PP CS
Sbjct: 361 ISATGRSKVLQFVVYIPSARECPLYLQLPDGELSKTNAFISPMWGGVVIWNPPGCS 416


>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
            16032434-16032715,16032790-16032948,16033034-16033390,
            16033482-16033622,16033919-16034045,16034121-16034263,
            16034740-16034917,16035019-16035552,16035628-16035812,
            16036551-16036637,16036710-16036850,16036896-16037175,
            16037944-16038020,16038326-16039138,16039292-16039801,
            16039926-16040056,16040192-16040246,16040364-16040564,
            16040640-16040909,16041103-16041184,16041271-16041434,
            16041532-16041690,16041762-16042083,16042158-16042544,
            16042811-16042999,16043233-16043317,16043458-16043753,
            16043862-16043965,16044484-16044513,16044602-16044817,
            16044923-16045540,16045718-16045993,16046619-16046762,
            16046854-16046962,16047291-16047475,16047557-16047670,
            16048348-16048479,16048929-16049249,16049424-16049891,
            16054482-16054547,16054691-16054828,16054917-16055015,
            16057098-16057194,16057661-16057761,16057858-16058085,
            16059175-16059381,16059451-16059571,16059921-16059988,
            16060148-16060213,16060396-16060509,16060949-16061300,
            16063571-16063663,16063764-16063922,16064224-16064287,
            16064385-16064577,16064673-16064710,16065510-16065645,
            16065726-16065914,16065994-16066095,16067660-16067777,
            16067861-16067964,16070338-16070346,16071428-16071475,
            16071581-16071676,16072430-16072533,16073964-16074045,
            16076573-16076601,16076708-16076963
          Length = 4246

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 261  YIACFIFDSHLQFMDSK*FDDEFYK*PFVVSTYYFMNSL 145
            Y+AC + + +L+ +DS   D+E ++  F V    FM++L
Sbjct: 1194 YLACSVINDNLETVDSSSPDEEDHRKSFSVEEDSFMDAL 1232


>08_01_0475 -
           4185534-4186047,4187437-4187708,4188032-4188979,
           4190096-4190387,4190486-4191357,4192298-4192354,
           4192391-4192504,4192966-4193595
          Length = 1232

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = +1

Query: 172 YHKRLLIEFIIKLFTVHKLEVAIKYETGDIKEQHITSLPEWITV 303
           Y  ++ +E  ++++++HK + A   E   I+ + I    +W+T+
Sbjct: 199 YSSKMKVEMTVQVYSLHKSDKAKTGEDPYIQRKDIMKETKWVTI 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,630
Number of Sequences: 37544
Number of extensions: 301091
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)