Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28l23
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 514 RTHRRQERPSKER-RPRKWAWPADVIQQRLQTGRS 615
           + +R   RP ++R +PR +  P D +Q R + GR+
Sbjct: 260 KDNRSSSRPRRDRSQPRSYQPPVDPVQDRSRNGRA 294


>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
           protein F56A8.1 protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 515 LARYSIRVGEWIFNSFSMINCLTNWMLVTAL 423
           LARY   +  ++F SFSM+  + + MLVT L
Sbjct: 411 LARYIKMLASFVFVSFSMLVVVISLMLVTLL 441


>U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical
           protein C39H7.4 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -3

Query: 279 CNMLLFYIACFIFDSHLQFMDSK*FDDEFYK*PFVVSTYYFMNSLLVLLSYFTSLYSNYY 100
           C ++ F    FI  S +    +    + + K   + + Y+F N++ +L+S    +++   
Sbjct: 243 CYIVSFVAGAFILSSQVVLTTAH--GNSYKKEKILANLYHFSNTVAILISITVIVFAAIS 300

Query: 99  FINIVKMNIQLAVHAMMF--LNLGNL 28
           F ++ K+N +      M   LNLG +
Sbjct: 301 FQDVNKVNHKTDTCTWMSAPLNLGGI 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,803
Number of Sequences: 27780
Number of extensions: 260107
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)