Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28l19
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 28 0.90
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 2.1
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 27 2.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.6
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 4.8
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 4.8
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 4.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 4.8
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 6.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 6.3
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 25 8.4
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 8.4
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 8.4
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 8.4
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 8.4
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 8.4
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 28.3 bits (60), Expect = 0.90
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 574 GVGADLSTASLQFGSSVVLFSDLRTC--SCFGASCSDSSYTGPFCSVSLFKKLVSPGGGF 401
G GA+ +TA+ G+ LF + T + FG++ S + TG F S + G G
Sbjct: 498 GAGANTNTATNATGTGGSLFGNANTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGTGL 557
Query: 400 F 398
F
Sbjct: 558 F 558
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 354 WETLPAAPWSHMYKMKKPPPGDTSF 428
WE L A W H+Y + P DT+F
Sbjct: 122 WEALKAF-WKHLYSLLLKDPNDTTF 145
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 445 SRKAQCMNYQSRTPRNTSKF*DLKREPPRIRTARKQCSDPLPRR 576
S + +N +S + + LK PP RTARK P+PRR
Sbjct: 165 SHPSSPVNGKSSDIHKSQSYQHLKNSPPNSRTARK----PVPRR 204
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -1
Query: 586 ITISGVGADLSTASLQFGSSVVLFSDLRT---CSCFGASCSDSSYTGPFCSVSLFKKLV 419
+ ++G G F SS LFS LR +C G D S SV++F ++
Sbjct: 61 VVVTGAGISCDAGIPDFRSSEGLFSSLRAEYKLNCSGKELFDGSVYRDLKSVNIFHAMI 119
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 486 GRPALIVHTLGLSAPSLCSRNWYRPAE 406
GRP I HT+GLS + R + P E
Sbjct: 121 GRPQKIPHTVGLSKSTRKERKQFTPEE 147
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 562 DLSTASLQFGSSVVLFSDLRTCSC-FGASCSDSSYTGPFCSVSLFKKLVSPG 410
DLST +FG ++ + S SC++SSY C V + ++ +S G
Sbjct: 359 DLSTPVSKFGEAIEKNKWPKKLSAGLIGSCTNSSYQDMTCVVDVVEQAISAG 410
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 444 EQKGPVYELSEQDAPKHEQVLRSEKRTTEDPNCKEAVLR 560
E++GP Y +D P E +L KEA+LR
Sbjct: 371 EERGPRYACVHRDRPIEESLLEFRNMRDGKYQPKEAILR 409
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 417 DTSFLNKETEQKGPVYELSEQDAPKHEQVLR 509
D N ++ P +EL E + KH +LR
Sbjct: 147 DDGEYNSDSSSTDPAFELKEDQSWKHSSILR 177
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 4.8
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 156 RHRCQPGGRNLAIYTVG----CKRVEAPESAIECEEVVEDTNMQFPFCCTRLRCLVVVRG 323
+ R + G ++A + G C RV S+++C +VE QF ++ LV+++
Sbjct: 720 KKRLKSDGTSIAHWLQGLASFCGRVFRRYSSLDCTSIVEYVIKQFK--VNQMFDLVILK- 776
Query: 324 EVWTRVLG-QPWETL 365
E+ +++ G QPW L
Sbjct: 777 ELLSQMTGLQPWTNL 791
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 423 SFLNKETEQKGPVYELSEQDAPKHEQVLR-SEKRT 524
SFL+K + +++L E D+ K ++LR E+RT
Sbjct: 210 SFLSKIEKSACEIHDLKESDSFKDHEILRLKEERT 244
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 356 GNAPSGPLEPHVQDEETSAGRYQFLEQRDGAERPSV 463
GNAP+ +E + E +Y+ E ++GAE+PSV
Sbjct: 266 GNAPACMMEEWIH-EMIETRKYKS-ENKEGAEKPSV 299
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = +3
Query: 150 CTRHRCQPGGRNLAIYTVGCKRVEAPESAIECEEVVEDTNMQFPFCC 290
C+R G ++IY G P +++ +++ T+M P C
Sbjct: 473 CSRGPTLDGDTGVSIYAPGGAITSVPPYSLQNSQLMNGTSMSSPSAC 519
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 480 PALIVHTLGLSAPSLCSRN---WYRPAEVSSSCTCGS 379
P + + LGLS P + + WYRP S++ T S
Sbjct: 295 PYISAYKLGLSEPYINFESLFYWYRPTPKSATATADS 331
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 433 TKRRSRKAQCMNYQSRTPRNTSKF 504
++R S A C++ S +PRN ++F
Sbjct: 184 SERESHVANCLSNNSSSPRNMTEF 207
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 484 ASCSDSSYTGPFCSVSLFKKLVSPGGGFFIL 392
AS D S + P CS+ K GGF +L
Sbjct: 159 ASLLDFSLSDPLCSIQYIKSCQRYEGGFSLL 189
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 43 PSALDHQTTLSRISTARTRGQCRSTPRIQSGLTRTL----ARGTAVSPGVGTSLSTRSVA 210
PS + +++ R + + + TPR+ S RTL + + SPG TS + ++
Sbjct: 88 PSPAESESSERRHTPQTNSQKSQKTPRLSSNKRRTLKNDAKQRNSQSPGTDTSDANLTIQ 147
Query: 211 SAWKPQ 228
S P+
Sbjct: 148 SIEAPR 153
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 456 PVYELSEQDA-PKHEQVLRSEKRTTEDPNCKEAVLR 560
P+ E +E +HE+VL ++ D NC E ++R
Sbjct: 279 PLLEATEDVLIAQHEEVLHNDFARMLDQNCSEDIIR 314
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 356 GNAPSGPLEPHVQDEETSAGRYQFLEQRDGAERPSV*TIRAGRPETRASSEI*KENHRGS 535
GN PSG P ++E ++L +R A +P T+ T+ +E +
Sbjct: 158 GNTPSGAQTPAAEEENVKT-LDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELF--A 214
Query: 536 ELQGSSAQIRSHA 574
L+ S++Q +S A
Sbjct: 215 SLKKSASQKKSAA 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,182
Number of Sequences: 5004
Number of extensions: 56345
Number of successful extensions: 195
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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