Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28l19
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 30 1.2
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 30 1.2
04_04_0058 - 22416949-22418196 29 2.8
04_01_0503 + 6594896-6595804 29 3.7
06_03_0100 + 16643876-16643947,16644846-16644924,16645699-16646177 28 4.9
03_05_0835 - 28065505-28065656,28066547-28066604,28067535-280676... 28 4.9
10_07_0149 - 13417794-13417956,13418079-13418252,13418423-134186... 28 6.5
08_02_1633 + 28392378-28393445 28 6.5
05_01_0470 - 3747783-3748097,3749433-3750305 28 6.5
07_03_0683 + 20671067-20671951,20672030-20672203 27 8.6
06_03_0189 - 17697779-17698939 27 8.6
05_03_0177 - 9245131-9245793 27 8.6
03_05_0483 - 24806984-24808324 27 8.6
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 154 VQEYASAHSEYAACFCIVLGSVQY*SLKESFDGPALMVVINPTSTKA 14
+ + + Y C+ ++L Y SLKE+FD M V +S KA
Sbjct: 3258 IHHISLVRTTYRVCYSLILDKTSYLSLKETFDQFTSMWVDMKSSLKA 3304
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 317 AG*SVDQSPGAAVGNAPSGPLEPHVQDEETSAGRYQFLE 433
+G S D+ PGA +G AP ETS+G FLE
Sbjct: 536 SGGSEDKGPGATMGTAPGLVSSSFPSKTETSSGSEYFLE 574
>04_04_0058 - 22416949-22418196
Length = 415
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 411 PGDTSFLNKETEQKGPVYELSEQDAPKHEQVLRSEKRTTEDPNCKEAVLRSAPTPDIVI 587
PGD +E E++ E +Q AP H + R E+ ++ DP +R A + D I
Sbjct: 284 PGDAILERQEEEEEA---EQEDQGAPPHMEENRQEQSSSPDPLPPPRNVRRAASMDAAI 339
>04_01_0503 + 6594896-6595804
Length = 302
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 171 PGGRNLAIY-TVGCKRVEAPESAIECEEVVEDTNMQFPFCCTRLRCLVVVRGEVWTRV 341
PG N +Y V C R +A EC+ + D+ Q P CC + VV+ + RV
Sbjct: 202 PGADNGTMYGLVQCMR---DRTAAECDRCLNDSVQQLPSCCWGHQGGVVLGYNYYVRV 256
>06_03_0100 + 16643876-16643947,16644846-16644924,16645699-16646177
Length = 209
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 399 SSCTCGSRG-PLGAFPTAAPGLWSTL 325
++C C PLGAF + PG+W TL
Sbjct: 45 AACICVLLATPLGAFVPSCPGVWQTL 70
>03_05_0835 -
28065505-28065656,28066547-28066604,28067535-28067642,
28067796-28067855,28067940-28068015,28068470-28068627,
28068787-28068849,28069003-28069142,28070793-28071882
Length = 634
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/87 (21%), Positives = 38/87 (43%)
Frame = +3
Query: 177 GRNLAIYTVGCKRVEAPESAIECEEVVEDTNMQFPFCCTRLRCLVVVRGEVWTRVLGQPW 356
G I+++GC +E I V + +++FP C ++ + + E+ T V+ +
Sbjct: 538 GPQADIWSLGCTVLEMLTRNIPYPNVEWENDLKFPAICQKMLKISLASSEIRTTVVRE-- 595
Query: 357 ETLPAAPWSHMYKMKKPPPGDTSFLNK 437
W+ ++K P GD +K
Sbjct: 596 ---RDNGWNMKRDLRKEPHGDECMKSK 619
>10_07_0149 -
13417794-13417956,13418079-13418252,13418423-13418610,
13418698-13418775,13418889-13418993,13419613-13419915
Length = 336
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 297 LRCLVVVRGEVWTRVLGQPWETLPAAPWSHMYKMK-KPPPGDTSFLNKETEQKGPVYE 467
LRC++ GE LG+PW ++H + + P G ++ E E+ +E
Sbjct: 224 LRCIITGNGEAGYMFLGRPWGPFGRVVFAHTFMDRCIKPAGWHNWDRSENERTACFFE 281
>08_02_1633 + 28392378-28393445
Length = 355
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -1
Query: 355 HGCPRTLVHTSPRTTTRH---LSLVQQKG 278
H CP HT+PR+ H LSL+Q++G
Sbjct: 279 HDCPNHPPHTTPRSWDAHVHDLSLLQRRG 307
>05_01_0470 - 3747783-3748097,3749433-3750305
Length = 395
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 405 PPPGDTSFLNKETEQKGPVYELSEQDAPK 491
PPP + T +K PV+ELS + +PK
Sbjct: 148 PPPTHQPYAPIPTTKKSPVFELSGEMSPK 176
>07_03_0683 + 20671067-20671951,20672030-20672203
Length = 352
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 487 GASCSDSSYTGPFCSVSLFKKLVSPGGGFFI 395
G SC+ P SV++ ++ VSPGGG ++
Sbjct: 94 GLSCAYELSKDPSVSVAVIEQSVSPGGGAWL 124
>06_03_0189 - 17697779-17698939
Length = 386
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 368 WERFPRLPQDSGPHFTPHNY---KTSKSCAAKRELHVCIFD 255
W ++ + P P+ P Y ++K+CAA++++ C FD
Sbjct: 221 WRKYGQKPIKGSPY--PRGYYRCSSNKNCAARKQVERCRFD 259
>05_03_0177 - 9245131-9245793
Length = 220
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 100 GQCRSTPRIQSGLT---RTLARGTAVSPGVGTSLSTRSVASAWKP 225
G+ R PR++ G R+++RG GT S+R AWKP
Sbjct: 155 GRRRRRPRMRRGAAPSWRSVSRGCGRRRQRGTLPSSRGQGGAWKP 199
>03_05_0483 - 24806984-24808324
Length = 446
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 368 WERFPRL-PQDSGPHFTPHNYKTSKSCAA 285
W+R P + P + G H TP + T K AA
Sbjct: 236 WQRLPYISPYEDGSHLTPRSDITEKRTAA 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,687,500
Number of Sequences: 37544
Number of extensions: 461370
Number of successful extensions: 1620
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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