Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28l16
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0357 - 16933446-16933512,16933895-16934047,16935341-169354...    55   5e-08
02_04_0283 - 21577324-21577336,21577631-21577645,21578617-215787...    46   3e-05
08_02_0962 - 23064922-23064952,23065045-23065175,23066839-230668...    30   2.0  
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    29   2.6  
03_02_0850 + 11775232-11776077,11776761-11777321                       29   2.6  
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550     29   3.4  
07_03_0607 + 19916946-19917479,19917543-19918010,19918092-199184...    28   6.0  
09_03_0148 + 12770010-12770266,12772172-12772314,12773214-127735...    28   7.9  

>09_04_0357 -
           16933446-16933512,16933895-16934047,16935341-16935440,
           16935540-16935675
          Length = 151

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
 Frame = +2

Query: 212 LAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYTG-GC 388
           +AG +F AGWWF +DA       +    ++ G+ A+L+ +M N+V+  ++  + Y+  G 
Sbjct: 15  VAGAVFGAGWWFWVDAVVCSSVQVSFLHYLPGIFASLAALMFNAVNKDEIGYDYYSPYGD 74

Query: 389 MGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQ 538
                 +LWLF+ +VV F  L  +  +L  + +        W GV   +Q
Sbjct: 75  DSEWRVKLWLFVAYVVSFVCLAGSVGMLVQDAL-TDKGPSVWTGVAGVLQ 123


>02_04_0283 -
           21577324-21577336,21577631-21577645,21578617-21578769,
           21579557-21579619,21579728-21579824,21579934-21580075
          Length = 160

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
 Frame = +2

Query: 212 LAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYT---- 379
           +AG +F  GWWF +DA       +P   ++ G+ A+ + +M N V         Y+    
Sbjct: 17  VAGAVFGVGWWFWVDAVVCSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDD 76

Query: 380 ------GG-----------CMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKH 508
                 G            C      +LWLF+ +VV F SL  A   L  + +   +   
Sbjct: 77  SEWRSVGNFSHDLLIHGYQCYRCLWLKLWLFVSYVVSFVSLAGAVGFLVQDAL-TDTGPS 135

Query: 509 AWPGVGLFMQNAFI 550
           AW GV   +Q+ F+
Sbjct: 136 AWTGVAGVLQSVFV 149


>08_02_0962 -
           23064922-23064952,23065045-23065175,23066839-23066864,
           23067176-23067311
          Length = 107

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 191 RNIMASILAGLLFFAGWWFIIDA 259
           R I+   +AG +F  GWWF +DA
Sbjct: 8   RGILGPGVAGAVFGVGWWFWVDA 30


>08_01_0090 -
           649631-651162,653189-655019,655313-655365,655731-655735,
           656209-656411,656837-657292,657718-657805,657917-658017,
           658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 514 PGVFGGTSINIVRKEYP--AGSNEGRKTNNESKEEPKSGTTRSHA 386
           P      ++++V  E P  A +N  R  N  +++EP+SG TRS A
Sbjct: 95  PDEAASVAVSVVDVERPVAAPANWRRAPNGAAEQEPRSGGTRSEA 139


>03_02_0850 + 11775232-11776077,11776761-11777321
          Length = 468

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 212 LAGLLFFAGWWFIIDAASVYPGDL 283
           +A LLFF  W+ ++D+A+V P  L
Sbjct: 23  IAALLFFFSWYLLLDSAAVTPEPL 46


>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
          Length = 204

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 227 FFAGWW--FIIDAASVYPGDL 283
           F  GWW   ++DAA VYPG++
Sbjct: 173 FLFGWWDALMVDAAVVYPGEV 193


>07_03_0607 +
           19916946-19917479,19917543-19918010,19918092-19918479,
           19919025-19919076,19919294-19919333
          Length = 493

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 303 HT*AALGRS-PGYTEAASIINHHPA 232
           HT  ALGR  P  TE   I++HHPA
Sbjct: 163 HTDMALGRYVPFITEERGIVHHHPA 187


>09_03_0148 +
           12770010-12770266,12772172-12772314,12773214-12773596,
           12773895-12773971,12774061-12774211
          Length = 336

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 149 ISMPSCVWFESGEKRNIMASILAGLLFFAGWWFI 250
           IS+ SC++F + + +N+M +   G     G W I
Sbjct: 264 ISLFSCIYFLNDKMKNLMRASTTGFGVLVGGWII 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,303
Number of Sequences: 37544
Number of extensions: 410095
Number of successful extensions: 1135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)