Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28l13
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         30   1.9  
11_02_0033 + 7574845-7575004,7575370-7575429,7575582-7575623,757...    29   4.4  
08_01_0596 + 5253920-5254037,5254229-5254785                           29   4.4  
08_01_0594 + 5248020-5248137,5248330-5248886                           29   4.4  
08_01_0592 + 5242446-5242563,5242754-5243310                           29   4.4  
08_01_0591 + 5236254-5236374,5236553-5237109                           29   4.4  
08_01_0589 + 5227520-5227637,5227819-5228375                           29   4.4  
10_02_0126 - 5543658-5543670,5543748-5543840,5544344-5544529,554...    28   7.7  
08_02_0298 - 15477119-15477724,15478105-15478333,15478368-154784...    28   7.7  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 664 SIAATAAPPFKPKRITASRQK*AGR-WYLPVRTHKTPY 554
           S+A+ AAPPF P RIT+      GR +++ V     P+
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARKDVPF 202


>11_02_0033 +
           7574845-7575004,7575370-7575429,7575582-7575623,
           7576192-7576363,7577881-7577991,7578042-7578132
          Length = 211

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 370 IDELLNESKEAIRQTNEFLEKWR 438
           +DEL+  +K+ +R T++ +EKWR
Sbjct: 189 VDELVVNTKKLVRATSKEIEKWR 211


>08_01_0596 + 5253920-5254037,5254229-5254785
          Length = 224

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 529 TFNSN*TLLSVILNRGDIFV 470
           T N N TL S +LN+GD+FV
Sbjct: 131 TSNPNNTLFSKVLNKGDVFV 150


>08_01_0594 + 5248020-5248137,5248330-5248886
          Length = 224

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 529 TFNSN*TLLSVILNRGDIFV 470
           T N N TL S +LN+GD+FV
Sbjct: 131 TSNPNNTLFSKVLNKGDVFV 150


>08_01_0592 + 5242446-5242563,5242754-5243310
          Length = 224

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 529 TFNSN*TLLSVILNRGDIFV 470
           T N N TL S +LN+GD+FV
Sbjct: 131 TSNPNNTLFSKVLNKGDVFV 150


>08_01_0591 + 5236254-5236374,5236553-5237109
          Length = 225

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 529 TFNSN*TLLSVILNRGDIFV 470
           T N N TL S +LN+GD+FV
Sbjct: 132 TSNPNNTLFSKVLNKGDVFV 151


>08_01_0589 + 5227520-5227637,5227819-5228375
          Length = 224

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 529 TFNSN*TLLSVILNRGDIFV 470
           T N N TL S +LN+GD+FV
Sbjct: 131 TSNPNNTLFSKVLNKGDVFV 150


>10_02_0126 -
           5543658-5543670,5543748-5543840,5544344-5544529,
           5544613-5545310,5545323-5546237,5546842-5547081
          Length = 714

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 608 PEIGRAVVPTRADSQDALPPVPRSHN 531
           PE+    VP +A +   +P V RSHN
Sbjct: 464 PEVQETTVPEKASTSSEVPRVLRSHN 489


>08_02_0298 -
           15477119-15477724,15478105-15478333,15478368-15478498,
           15478556-15478891
          Length = 433

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 265 CQPIAFFSPPLAMFSSRNKLSCRISFGTYQRNHCLTNNRPGINLKRRKC 119
           C  I   S  +A+ + ++K SC   F  + RNH LT     + L+  KC
Sbjct: 350 CLRIMKLSCQVAILAIQHKPSCAKDFNEHDRNHVLTKASENL-LELDKC 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,440
Number of Sequences: 37544
Number of extensions: 353223
Number of successful extensions: 926
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)