Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28l09
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    32   0.31 
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    32   0.31 
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    31   0.71 
Z70270-7|CAH04652.1|  175|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80439-6|AAB37642.1|  564|Caenorhabditis elegans Ezrin/radixin/m...    28   5.0  
U80439-5|AAB37643.1|  563|Caenorhabditis elegans Ezrin/radixin/m...    28   5.0  
AY643539-1|AAT66915.1|  566|Caenorhabditis elegans ERM-1C protein.     28   5.0  
AY643538-1|AAT66914.1|  563|Caenorhabditis elegans ERM-1A protein.     28   5.0  
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    28   5.0  
AB107270-3|BAC98358.1|  564|Caenorhabditis elegans ERM-1B protein.     28   5.0  
AB107270-2|BAC98357.1|  566|Caenorhabditis elegans ERM-1Asv prot...    28   5.0  
AB107270-1|BAC98356.1|  563|Caenorhabditis elegans ERM-1A protein.     28   5.0  
AB107269-1|BAC98355.1|  564|Caenorhabditis elegans ERM-1B protein.     28   5.0  
AB107268-1|BAC98354.1|  563|Caenorhabditis elegans ERM-1A protein.     28   5.0  
U13645-4|AAA20986.2|  529|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   8.7  

>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
 Frame = +1

Query: 322 IYVMNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTL-HINNI 498
           +Y  NK  + N+   K +  +T ++  + +D +    + + S  H N T +  L HI+  
Sbjct: 458 MYSNNKTEELNISE-KNNVTSTFSEPSEKEDEASTTVISVISPLHTNATDSEILEHISEK 516

Query: 499 NSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNFE 648
           ++  ++G+S   +G         +G GE     ++  NS + N + ++ E
Sbjct: 517 STEESSGSSGEMSGDGSDNEASGEGSGEYDASGSSGDNSGEFNSSGSSGE 566


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
 Frame = +1

Query: 322 IYVMNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTL-HINNI 498
           +Y  NK  + N+   K +  +T ++  + +D +    + + S  H N T +  L HI+  
Sbjct: 458 MYSNNKTEELNISE-KNNVTSTFSEPSEKEDEASTTVISVISPLHTNATDSEILEHISEK 516

Query: 499 NSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNFE 648
           ++  ++G+S   +G         +G GE     ++  NS + N + ++ E
Sbjct: 517 STEESSGSSGEMSGDGSDNEASGEGSGEYDASGSSGDNSGEFNSSGSSGE 566


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +1

Query: 301 MCK*PR*IYVMNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQ---EHLNETL 471
           MCK  R I + +K +  + Q       +    SKK KDL++  + C K     +H + T 
Sbjct: 502 MCKGIRNIRLHHKKSHPDEQLTGFGIKSVVRTSKKGKDLAKVWDECFKKNRVLQHGSGTD 561

Query: 472 ANTLHINNINSNLTNGTSDHSNGSSEVLSEKAD 570
           +N LH +  +           +G+ + L E  D
Sbjct: 562 SNLLHFSRQDKGSKRSQKSMDSGAKQKLDEARD 594


>Z70270-7|CAH04652.1|  175|Caenorhabditis elegans Hypothetical
           protein C53D6.10 protein.
          Length = 175

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 358 QNIKCSQMNTKNKSKKTKDLSQADELCIKS-QEHLNETLANTL 483
           +N K S+  TKNK KK K  + ADE  + S +E L+    +TL
Sbjct: 90  KNGKSSETKTKNKVKKNKSKASADESQMGSAEERLSTNRPSTL 132


>Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical
           protein W09C5.2 protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = +1

Query: 373 SQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEV 552
           ++  +  K +  + +S  +EL  ++++ ++   A  + + +  S L NG    S  S  +
Sbjct: 354 TEKTSARKKRSDERMSALEELEQQNKQKIDAKRAEIIRLRHEISELKNGNLTSSQTSLAM 413

Query: 553 LSEKADGQGETVNKVT 600
            +E    Q  T+N  T
Sbjct: 414 YNENNHSQNSTLNSTT 429


>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/77 (18%), Positives = 35/77 (45%)
 Frame = +1

Query: 328 VMNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 507
           ++ K+    + NI+C++   K   +  ++++    +  + Q   N TLA       + ++
Sbjct: 233 LITKIDKTVIDNIRCTKDVAKIVKQLVENINSTHAVNKEIQNDKNSTLAEAKRTITLANS 292

Query: 508 LTNGTSDHSNGSSEVLS 558
             N   D +N + E ++
Sbjct: 293 TINSNKDWNNNTQEAIN 309


>U80439-6|AAB37642.1|  564|Caenorhabditis elegans
           Ezrin/radixin/moesin protein 1,isoform b protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 444 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 483


>U80439-5|AAB37643.1|  563|Caenorhabditis elegans
           Ezrin/radixin/moesin protein 1,isoform a protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 443 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 482


>AY643539-1|AAT66915.1|  566|Caenorhabditis elegans ERM-1C protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 446 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 485


>AY643538-1|AAT66914.1|  563|Caenorhabditis elegans ERM-1A protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 443 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 482


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
           protein Y26D4A.14 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 490 NNINSNLTNGTSDHSN--GSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNF 645
           +N  SN+   +   SN   SS  +S+K +G G  +NK +   +  + +  +NNF
Sbjct: 676 SNTESNIKTSSIKESNIETSSLKVSKKIEGSGNKMNKKSKKSDDKKISKANNNF 729


>AB107270-3|BAC98358.1|  564|Caenorhabditis elegans ERM-1B protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 444 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 483


>AB107270-2|BAC98357.1|  566|Caenorhabditis elegans ERM-1Asv
           protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 446 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 485


>AB107270-1|BAC98356.1|  563|Caenorhabditis elegans ERM-1A protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 443 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 482


>AB107269-1|BAC98355.1|  564|Caenorhabditis elegans ERM-1B protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 444 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 483


>AB107268-1|BAC98354.1|  563|Caenorhabditis elegans ERM-1A protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 439 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 561
           I SQ+H  +  +N+ H++N +++    T D  NG++E+ ++
Sbjct: 443 IHSQQH-TQHYSNSHHVSNGHAHDETATDDEDNGATELTND 482


>U13645-4|AAA20986.2|  529|Caenorhabditis elegans Hypothetical
           protein C05D10.1a protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +1

Query: 328 VMNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 507
           +MN +     +   CS++N     ++  D S   +L   + +   +TL +   +N + S 
Sbjct: 72  IMNHLHAPQCKCTTCSKVNQPGAEEQKNDTSVLSQLFPNASDQQLKTLLDLSKMNKLPSQ 131

Query: 508 LTNGTSDHSNGSS 546
           + +   D  NGSS
Sbjct: 132 VVH--KDQQNGSS 142


>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 472 ANTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNN 642
           +N     N NSN  NG S + NG++   S   +G     N   ++ N   +N   NN
Sbjct: 223 SNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNGNSNGNNGNGSNGNGNGNNGNGNN 279


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +1

Query: 409 KDLSQADELCIKSQEHLNETL--ANTLHINN-INSNLTNGTSDHSNGSSEVLSEKADGQG 579
           K L+Q  E     + H +E    + TL     +   + +   D   G +  +SEKA G  
Sbjct: 265 KTLAQIAEFLDGQEAHASEKALGSGTLGTGGLVEEPIRSSQEDAEEGKAHRISEKAHGTV 324

Query: 580 ETVNKVTN 603
           ETV K  N
Sbjct: 325 ETVGKPEN 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,362
Number of Sequences: 27780
Number of extensions: 238927
Number of successful extensions: 849
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)