Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28l09
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    31   0.013
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.12 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.48 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
 Frame = +1

Query: 334 NKVADN-NVQNIKCSQMNT-KNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 507
           N+ ADN N  N      N  K    +  D  Q D     ++++ N+   N  + N  N N
Sbjct: 434 NQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGN 493

Query: 508 LTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHND 630
             NG   + N  +          G   N   N+ N    ND
Sbjct: 494 RQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRND 534



 Score = 29.9 bits (64), Expect = 0.022
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
 Frame = +1

Query: 334 NKVADN-NVQNIKCSQMNTKNKS-KKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 507
           N+ ADN N  N   +  N  N++  K     Q D     ++++ N    N  + N  N N
Sbjct: 429 NQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDN 488

Query: 508 LTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNN 642
             NG   + N  ++    K +G  +  NK     N  + ND  NN
Sbjct: 489 KQNGNRQNGNKQND---NKQNGNRQNDNKR----NGNRQNDNQNN 526



 Score = 27.9 bits (59), Expect = 0.090
 Identities = 24/105 (22%), Positives = 44/105 (41%)
 Frame = +1

Query: 328 VMNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 507
           ++    D+ ++N +C + + +N   +  D   AD          N+  AN  + +N N+N
Sbjct: 405 ILGANVDDLMRNTRCGRYHNQNAGNQNADNQNAD----------NQN-ANNQNADNQNAN 453

Query: 508 LTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNN 642
             NG   + N  ++    K +G  +  NK     N  + ND   N
Sbjct: 454 KQNGNRQNDNRQND---NKQNGNRQNDNKQ----NGNRQNDNKQN 491



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = +1

Query: 346 DNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTS 525
           ++N QN      N +N +K+  +  Q D     ++++ N+   N  + N  N N  NG  
Sbjct: 461 NDNRQNDNKQNGNRQNDNKQNGN-RQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNR 519

Query: 526 DHSNGSSEVLSEKADGQ 576
            + N +++  + + D Q
Sbjct: 520 QNDNQNNQNDNNRNDNQ 536


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 460 NETLANTLHINNINSNLTNGTSDHSNGS 543
           N   +N  + NN N+N  NG +D+ NG+
Sbjct: 234 NTNASNNNNNNNNNNNNNNGANDNGNGN 261



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/50 (20%), Positives = 24/50 (48%)
 Frame = +1

Query: 475 NTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQH 624
           +T+   N N+N +N  ++++N ++       +G G   +   N+ +   H
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCH 275



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 472 ANTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDV 609
           ANT   NN N+N  N  ++++NG+    ++  +G G + N    D+
Sbjct: 233 ANTNASNNNNNN--NNNNNNNNGA----NDNGNGNGASNNNNNGDM 272


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +1

Query: 331 MNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNE---TLANTLHINNIN 501
           +N+   + + N + S  NT+NKS    D+ +    C      L E    L +  HIN   
Sbjct: 169 INRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINT-R 227

Query: 502 SNLTNG 519
            N  NG
Sbjct: 228 HNTKNG 233


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 490 NNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKV 597
           +N+N+N  NG ++ S   S    E       ++N V
Sbjct: 536 SNVNNNSGNGNTNSSARDSSPAIESISVDSGSINTV 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,234
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)