Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28l08
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0442 - 25229186-25229568,25229740-25232671                       31   1.2  
02_05_0816 + 31986370-31987662                                         29   4.8  
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    28   6.3  
07_02_0002 + 11650397-11650465,11650600-11650848,11651189-116512...    28   8.3  
05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350...    28   8.3  
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479...    28   8.3  

>04_04_0442 - 25229186-25229568,25229740-25232671
          Length = 1104

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 147 LVLVNSSKNSDEYTKPDNGRGSKSK-KSKMAQNTATGTFSNIITQIQNLPTMDLGR-RFR 320
           L+L+N   N      P      KS  + ++A N+ TG+F   +  + NL T++LGR +F 
Sbjct: 437 LILLNLGANKLIGNIPHGITSCKSLVQLRLADNSLTGSFPTDLCNLVNLTTIELGRNKFN 496

Query: 321 TP 326
            P
Sbjct: 497 GP 498


>02_05_0816 + 31986370-31987662
          Length = 430

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 75  QSVDVSTTMLLQRVAYLGIFLFYML--VLVNSSKNSDEYTKPDNGRGSKS 218
           Q V VSTTM++   A +G+FLF  +  + +      D  T+     GS+S
Sbjct: 44  QQVHVSTTMIVLLAAVVGVFLFIAISTIYLRHCTGYDPATEGGGVGGSRS 93


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 314 ISNPVQNWKQMWKGYQK 364
           +S P  NWK+ WKG+Q+
Sbjct: 334 LSGPPINWKKHWKGWQR 350


>07_02_0002 +
           11650397-11650465,11650600-11650848,11651189-11651219,
           11651491-11651535,11651963-11652027
          Length = 152

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 159 NSSKNSDEYTKPDNGRGSKSKKSKMAQNTATGT 257
           N+SKN  + T+ DNG GSK KKS        GT
Sbjct: 87  NTSKNVGKRTRQDNG-GSKIKKSSDHNLQGQGT 118


>05_07_0246 +
           28634530-28634735,28634841-28634901,28634996-28635088,
           28635326-28635391,28635506-28635576,28636225-28636329,
           28637065-28637134
          Length = 223

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 481 IGSVLVNLSGSRDPGGILVNSFMIPIIVFSNWAN 380
           +G V ++LSG+ DP    +++FM+ I V SN  N
Sbjct: 153 VGWVHISLSGA-DPRETFIHTFMLQISVLSNHLN 185


>05_06_0138 +
           25946545-25946632,25946715-25947489,25947627-25947910,
           25948100-25948238,25948323-25948394,25948477-25948548,
           25948726-25948806,25948894-25949054,25949162-25949424,
           25949661-25949787,25949974-25950042,25950154-25950346,
           25950446-25950860
          Length = 912

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 219 KKSKMAQNTATGTFSNIITQIQNLPTMDL 305
           K   ++ N  TG+  N+I+Q+Q L  +DL
Sbjct: 451 KNLDLSHNNLTGSIPNVISQLQFLAVLDL 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,353
Number of Sequences: 37544
Number of extensions: 320177
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)