Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28l07
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 33 0.037
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 29 0.45
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 1.4
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 27 3.2
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 26 5.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 5.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 7.4
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 9.7
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 25 9.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 9.7
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 33.1 bits (72), Expect = 0.037
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 376 KPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQ 507
K PT PP P PTP++ LI TP PG++ F SQ
Sbjct: 154 KTSEPT-PPFSYVQTPCIPTPSSALIDTPFPGALDSEFGFDESQ 196
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.45
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 382 VHPTLPPNQIKPVPVYPTPATRLITTPGPGS 474
++P P ++KP PTPA + T+P P S
Sbjct: 314 INPKRRPIEVKPAAPVPTPAPPVKTSPHPAS 344
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 67 DLEKKAVTALVFRQHL---RECLVNMKIIGIVLLLVFYGSECRK 189
DLEK AL+ L + CL KI + L F G ECRK
Sbjct: 553 DLEKNITEALLTGDVLSAVKACLEEKKISEALFLSTFGGKECRK 596
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +1
Query: 352 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 510
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 252 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 303
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +1
Query: 352 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 510
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 330 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 381
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +1
Query: 352 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 510
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 408 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 459
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +1
Query: 352 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 510
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 486 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 537
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +1
Query: 352 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 510
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 564 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 615
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 493 FYNSQGKGSVIKPYSYSDAVKQG*TFNENIKDLICLLRKYC 615
+Y + + V+K + + VK N + KD +C++ YC
Sbjct: 115 YYYIRKELDVLKVLDHENVVKLYQVINSDYKDSLCMVLNYC 155
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 375 RSYRR*SCH-DRFDLSWRHGCRSRLDNRRLCEWL 277
R++R+ + H D D WR+ +R+ + EWL
Sbjct: 236 RAFRQANAHPDSMDFHWRYNGTARMTTSIMEEWL 269
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 196 KPIDKNANIDFINMEAGGARP 258
K + KN+ I F++ E GG +P
Sbjct: 182 KSVKKNSEIKFVSEERGGTKP 202
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 355 ALTPVAPKPVHPTLPP 402
+LTP++ +P H +LPP
Sbjct: 360 SLTPLSSRPAHTSLPP 375
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 417 CASVPYSSDAAHHHPRTWKRAAARHFLQ*PGQRKC 521
C +P+ +DAA HP + A R L P KC
Sbjct: 385 CILIPHINDAASDHPAWPQDAFNRVALGLPSNFKC 419
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 573 VKCLTLLYGIAVTVRFDYTSFALAIVESDE 484
++CL L+ A V ++T LA +SDE
Sbjct: 48 LRCLNLMNAAARVVMSEFTDIVLAYGDSDE 77
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 364 PVAPKP---VHPTLPPNQIKPVPVYPTPATRLITTPGP 468
P PKP V P PP+ PVP TP+ L P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVP---TPSAGLPPVPVP 1232
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 397 PPNQIKPVPVYPTPATRLITTP 462
P P PV P PA +TTP
Sbjct: 361 PQAAFPPPPVMPQPAAAAVTTP 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,849
Number of Sequences: 5004
Number of extensions: 51424
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -