Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28l03
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces... 40 3e-04
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 30 0.28
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 26 4.5
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 26 4.5
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 5.9
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 5.9
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.8
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 7.8
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 7.8
>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +3
Query: 270 DIQ-HFSPDDITVKIVDGFVVVEALHEEKQDQHGWVSRRF---TRRCPIPEGCDTDAVES 437
D+Q H+ +T+ G VV E +E + W RRF +R IP D D +E+
Sbjct: 61 DVQVHYDSGKLTIS---GEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEA 117
Query: 438 RLSSDGVLTVSMPLQRRISNERRVPI 515
S+G+LTV++P + ++++ I
Sbjct: 118 NF-SNGLLTVTLPKVEKSQTKKQIAI 142
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 39 KSWTKYFSNMSSLLPYL 89
KSW +YF + S+LLPYL
Sbjct: 237 KSWAEYFRSFSTLLPYL 253
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +1
Query: 178 KYPGANFHGGS--QDCVREVRLRRINLNSRSIWXXXXXXXXXXXXXXSMASSSWK--LFT 345
+Y F GS ++C R L + LNSR W S A S++K L
Sbjct: 131 RYQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKSILLN 190
Query: 346 KKSRIS 363
KS+++
Sbjct: 191 HKSQVA 196
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +3
Query: 345 EEKQDQHGWVSRRFTRRCPIPEGCDTDAVESRLSSDGVLTVSMPLQRRISNERRVPIIQT 524
EEKQD+ +R R+ E C E LSS +T + L + + +++
Sbjct: 300 EEKQDKKQSTNRDLCRK----ESCKK---EPSLSSSDQVTKFLALDKCLPRRSYFEVVEI 352
Query: 525 GPVKISDEPKP 557
PV+I D P
Sbjct: 353 EPVEIPDSGAP 363
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 480 QRRISNERRVPIIQTGPVKISDEPKPECVDSIETPPANGE 599
Q +S++ ++ I+ G ++ +EP E S PP N E
Sbjct: 286 QDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPILPPKNQE 325
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 474 PLQRRIS--NERRVPIIQTGPVKISDEP 551
PLQR ++ N+ + PI GP + DEP
Sbjct: 231 PLQRHVATLNQYQSPIFNLGPDILEDEP 258
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 210 PGLREGSSIKKDKS--KFQINLDIQHFSPDDITVKIVDGFVVVEALHEEKQDQHGWVSRR 383
PG+ SI S K IN I+ D TV+I +G V+E +HE Q + +S
Sbjct: 1124 PGVVAMKSISDHGSHCKSYINPPIEQIVHDIPTVRISNGKDVIENIHEGDQAE---ISFH 1180
Query: 384 FTRRCP 401
FT P
Sbjct: 1181 FTGTPP 1186
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 378 RRFTRRCPIPEGCDTDAVESRLSSDG-VLTVSMPLQRRISNE 500
+RF + EG DTD+V SR G +L V+ + R+ +++
Sbjct: 351 KRFLPSVLVDEGIDTDSVSSRFLLHGRLLKVTSAVTRKEASD 392
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 341 KSFHDDEAIDNFHSNVVRRKVLNVQI 264
+SF +DE I SNVVR K V I
Sbjct: 323 ESFSEDENISTGTSNVVRNKPTTVNI 348
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 417 DTDAVESRLSSDGVLTVSMPLQRRISNERRVP 512
D+ +ESR S + L S +QR IS E P
Sbjct: 15 DSTIIESRYSPEEYLEQSFEIQRIISGENSEP 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,698
Number of Sequences: 5004
Number of extensions: 56864
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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