Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28l02
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0393 + 17255315-17256019,17256107-17257909 29 2.8
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 29 3.8
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 28 6.6
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 28 6.6
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 28 6.6
09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273... 28 8.7
04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889... 28 8.7
>09_04_0393 + 17255315-17256019,17256107-17257909
Length = 835
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +1
Query: 352 ATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYTS 531
AT +D+ ELD+++K +SQ T+ + ++ ++ + K V+ L T
Sbjct: 334 ATALEDLQSVKMELDQLQKEYTSLISQRDNTETKARKAIVASQEIEK-VVQDLTIKVIT- 391
Query: 532 MRDFDLYKQRFNEILAKNKE--ESLVDMEDFINDMFQNMMSSVDIKV 666
M+D + + N ++A+ K+ +L +D +N +QN + +D +V
Sbjct: 392 MKDL-ITTSQANHVIAEGKKINAALAYQQDMVN--WQNELKQIDDEV 435
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Frame = +2
Query: 215 VKERPSSLIQM*TFRKVPHSPTSIHLQSITNDMSTMKCPLGNPI*VLPPIRMSY*QIQNS 394
V E P S + P + S L S + + T P+G+ PP + Q+
Sbjct: 692 VSESPPSNSIGYFYGSTPENHRSSRLSSSPHGIPTGSSPVGSVPKSFPPFQHPSHQLLEK 751
Query: 395 TKSKREFMRLFHKNCKPTRAHLSVS-TRT*NSLRRL*KSYLR 517
K +++ F C R L + + NSL R YLR
Sbjct: 752 NKFQQQRYNKFKNRCIAERKKLGIGCSEEMNSLYRFWSYYLR 793
>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 28.3 bits (60), Expect = 6.6
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = +1
Query: 397 KIEKRVYETVSQELQT---DESSSISLDSNI-KFFKTTVEKLFEN-FYTSMRDFDLYKQR 561
KI R+ S+E D + S+SL I K + L N F+ ++R ++ K
Sbjct: 857 KIRSRMAYLKSKEKMNRIFDGTKSLSLRFLIPKILEIVTIALNSNSFHPNVRTYNNLKT- 915
Query: 562 FNEILAKNKEESLVDMEDFINDMFQNMMSSVDIKVTGSTTTAKRSGN 702
L+ NK++ D E FQ++ +S D+ GS T + ++ N
Sbjct: 916 ----LSNNKDKGKFDAEFVRKRAFQDLTNSPDVVCLGSNTCSNKTKN 958
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +1
Query: 505 KLFENFYTSMRDFDLYKQRFNEILAKNKEESLVDMEDFINDMFQNMMSSVDIKVTGSTTT 684
K E+ MR+ + F+ IL ++++++ D+ +ND Q M+ ++ VT T
Sbjct: 43 KQLEDLTGKMRECKRLIKEFDRILKEDEKKNSADVNKQLNDKKQLMIKELNSYVTLRKTY 102
Query: 685 AKRSGN 702
GN
Sbjct: 103 QSSLGN 108
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 295 KYYERYEHDEVPVRESDLSATTDKDVILTNSE-LDK-IEKRVYETVSQELQTDESSSISL 468
K+ ++ E + + E DL+ ++ + ++ D ++K E++ QE+++ SS S+
Sbjct: 30 KWKKKDEKKDDDLSEEDLALKEQLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSV 89
Query: 469 DSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILA 579
+KF + L F T DL K+ +IL+
Sbjct: 90 PKPLKFLRPHYGTLKSYFETMPESSDL-KRYMADILS 125
>09_05_0005 +
20026190-20026343,20026483-20026682,20026918-20027309,
20027646-20027778,20027858-20027942,20028216-20028235
Length = 327
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 ISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILAKNKE 591
+ L+S + K +EKL E T+ R FNE+LA+N E
Sbjct: 269 LELESKVLVLKIEIEKLSEKLATAQR-------TFNELLAQNNE 305
>04_04_1614 +
34786296-34786315,34787432-34788347,34788426-34788950,
34789065-34789442,34790435-34790740
Length = 714
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/66 (24%), Positives = 38/66 (57%)
Frame = +1
Query: 385 SELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRF 564
SE D ++ RV L+ ES + + +KF K+ ++++ +NF + +++ +L +++
Sbjct: 490 SEADDLDSRV-----AALRATESEKVQQE--LKFVKSQMDQIIKNFESQLKNSEL--EQY 540
Query: 565 NEILAK 582
N ++ K
Sbjct: 541 NSLMRK 546
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,999,952
Number of Sequences: 37544
Number of extensions: 285174
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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