Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k24
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524...    29   2.5  
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336...    29   3.3  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 28   7.6  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 28   7.6  

>01_05_0669 -
           24152057-24152110,24152224-24152308,24152401-24152486,
           24153129-24154341,24154441-24154529,24154607-24154639,
           24154674-24154859,24155290-24155380,24155588-24155622,
           24155736-24155817,24155968-24156020,24156404-24156469,
           24156752-24156820,24156821-24156984,24157925-24158432,
           24158543-24158602
          Length = 957

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 306 ALQYTSISQRISFYCTQCFWKKDRLLFCHGFWSP 407
           A ++  + +RI  +     W+K++L+F  G WSP
Sbjct: 205 AQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSP 238


>05_05_0328 +
           24130887-24130919,24132207-24132279,24133542-24133635,
           24133924-24134037,24134121-24134169,24134364-24134873
          Length = 290

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 525 IEANLTMTNFTQGDLAAPSNTQVPRPKARLVSSQSSFLIAATRSHGKTR 379
           I+ N+ +T++   + +AP   Q P P A +V++ S  L++      KT+
Sbjct: 205 IDLNIELTDYDD-EGSAPLEVQPPAPAAGVVTTSSGPLVSEVNEEAKTK 252


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 29  TCNIKIK*KLH*THLVATKTDSMNLLSYLGMSLQSEVCLWTLLGL 163
           TC+ +++      HLV  K D +N L +  +S+Q   C W+ + +
Sbjct: 642 TCSKRVEDSERSVHLVPKKVDDLN-LKHPQLSVQPNSCSWSSINV 685


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 29  TCNIKIK*KLH*THLVATKTDSMNLLSYLGMSLQSEVCLWTLLGL 163
           TC+ +++      HLV  K D +N L +  +S+Q   C W+ + +
Sbjct: 643 TCSKRVEDSERSVHLVPKKVDDLN-LKHPQLSVQPNSCSWSSINV 686


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,930
Number of Sequences: 37544
Number of extensions: 346485
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)