Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k23
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         50   2e-07
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   2.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   2.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   3.8  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   6.6  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   6.6  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   6.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   8.7  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   8.7  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   8.7  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   8.7  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 55/185 (29%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
 Frame = +2

Query: 134 WIIDPVDGTMNFVHGFPHSSISVGLTINKEPVVGIIYNPIL------------GQMFTAK 277
           W +DP+DGT  F+ G  ++ I + L  N +PVV  I  P L            G + +A 
Sbjct: 133 WTLDPIDGTKGFLRGAQYA-ICLALIENGKPVVSAIGCPNLPYDFNQPETSPKGIIMSAV 191

Query: 278 KGQGAF--------LNETQIHVSQVKEFATALVT--FEAGTSRDPERFKAVMENYKILVS 427
           +  G F        L   Q+H+  V+    +      EAG S      +   E     + 
Sbjct: 192 RNHGCFQYSLHNEKLEPVQVHMQDVQNTKDSKFCEGVEAGHS-----MQGTQEEIAKYLG 246

Query: 428 KGHGVRTLGSAALNMAMVALGGADAYFE------FGIHAWDVAAGTVLVREAGGVVIDPA 589
              G   + S A   A +A G  D Y        F    WD A G++LV EAGGVV D  
Sbjct: 247 ITRGPTKMDSQA-KYASLARGDGDIYLRLPTKMTFEEKIWDHAGGSLLVEEAGGVVSDMF 305

Query: 590 GGPFD 604
           G P D
Sbjct: 306 GKPLD 310


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 123 SVNSHFVPSATDSSPINLWSGKALERPPTSVSSTFLSISVT 1
           S +SH  P++  SS   L+  +    PP S SS+ L  S T
Sbjct: 234 SSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQT 274


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect(2) = 2.2
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = -2

Query: 231 TTGSLLIVRPTDIELCGKPCTKFIVPSTGSMIHVGESVNSHFVPSATDSSPINLWSGKAL 52
           TTGS     P+    C    T   +P TG    +   +     P++T S+ I +      
Sbjct: 100 TTGSSSSPLPSTSTSC---TTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI------ 150

Query: 51  ERPPTSVSST 22
             PPTS SST
Sbjct: 151 --PPTSTSST 158



 Score = 23.8 bits (49), Expect(2) = 3.7
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -2

Query: 240 IIPTTGSLLIVRPTDIELCGKPCTKFI-VPSTGSMIHVGESVNSHFVPSATDSSPINLWS 64
           I PT+ S        +      CT    +P TG    +   +     P++T S+ I +  
Sbjct: 150 IPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI-- 207

Query: 63  GKALERPPTSVSST 22
                 PPTS SST
Sbjct: 208 ------PPTSTSST 215



 Score = 20.6 bits (41), Expect(2) = 2.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 45  PPTSVSSTFLSISVT 1
           PPTS SST + I  T
Sbjct: 196 PPTSTSSTSIPIPPT 210



 Score = 20.6 bits (41), Expect(2) = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 45  PPTSVSSTFLSISVT 1
           PPTS SST + I  T
Sbjct: 252 PPTSTSSTSIPIPPT 266


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 598 WSTSRINDHSTSFPHQNSSCCNIPSMNT 515
           WS     D+S S  HQ     N+P++NT
Sbjct: 827 WSKQDAFDYSKSSTHQEHLSKNLPTLNT 854


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 119 TDSPTWIIDPVDGTMNFVHGFPHSS 193
           T+  TW+   VD  MN V  F H S
Sbjct: 287 TEEKTWLSQSVDADMNPVFSFEHLS 311


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 603  SNGPPAGSMTTP-PASLTKTVPAATSQA*IPNSK*ASAPPKATIAIFSAAEPNVLTP 436
            S+G P+     P P+S   ++PA +    +P        PK ++A     +P+V  P
Sbjct: 1056 SSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 161 MNFVHGFPHSSISVGLTINKEPVVGIIYNPILGQMF 268
           +  +  +P++  +VGLT  ++PV   I  P+ G  F
Sbjct: 351 VKLIDKYPYAK-TVGLTFTEKPVFSYILKPLGGDKF 385


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 137 IIDPVDGTMNFVHG---FPHSSISVGLTINKEPVV 232
           ++  +DGT++++HG   FP       LT+ K  +V
Sbjct: 323 LVSAIDGTVDYLHGKSLFPEKRNFKELTMRKRSIV 357


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 398 VMENYKILVSKGHGVRTLGSAALNMAMVALGGADAYFEFG--IHAWDVAAGTV 550
           +++  + + SK      LGS+AL +A+V +GG     E G  I  W    G +
Sbjct: 86  ILQETEKIPSKKVAFWLLGSSALVLAIVVVGGITRLTESGLSITEWKPITGVI 138


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -2

Query: 234 PTTGSLLIVRPTDIELCGKPCTKFIVPSTGSMIHVGESVNSHFVPSATDSSPINLWSGKA 55
           P++ S   +  + +     P T     ST S +    S +S    S++ SS   + S  +
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL---SSSSSSSTASSSSSSSSIISSSSS 278

Query: 54  LERPPTSVSSTFLSIS 7
               PTS SST  S S
Sbjct: 279 SSSSPTSTSSTISSSS 294


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -2

Query: 597 GPPAGSMTT---PPASLTKTVPAATS 529
           G PA + TT   PPAS T T PA  S
Sbjct: 174 GKPAATGTTSNAPPASSTSTTPATGS 199


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 615 LDNMSNGPPAGSMTTPPASLTKTVPAATSQ 526
           L  +SNG P  S  T     T+ +P ATS+
Sbjct: 200 LTEVSNGAPLSSFFTVLELFTELIPEATSK 229


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 270 VNICPKIGL*IIPTTGSL-LIVRPTDIELCGKPCTKFIVPSTGSMIHVGES 121
           V  C  +G+ +  ++  L L ++  D+  CG P      P+   ++H GE+
Sbjct: 319 VMACADLGVCLHTSSSGLDLPMKVVDLFGCGVPVIALSYPTISELVHDGEN 369


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 137 IIDPVDGTMNFVHGFPHSSISVG 205
           ++  ++GT  FVH  P ++IS+G
Sbjct: 648 LMQTLEGTPAFVHAGPFANISIG 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,815
Number of Sequences: 5004
Number of extensions: 50969
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)