Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k19
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.3  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   7.0  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   9.3  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    25   9.3  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   9.3  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   9.3  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 252 LCSTTNCLQYCSTRNSRVKNFHVNLSVAS*LSMTWMKLLCIPHQMELVLALKFHKNSL 79
           L  T NCL+    +  +  N    +   S L     KLL IPH    + ALK  K S+
Sbjct: 635 LLITMNCLRVLE-KVCKYSNIRKEIIARSNLHENLKKLLAIPHDKLRLYALKVLKLSV 691


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 480 THYTVHVKPVSSTNAPQSYRVDATHESALTRESSYSITGLITGRQY 617
           T Y+V+++ ++ TN+  S  V ++  S+   E + ++T L TG  Y
Sbjct: 286 TFYSVNLESITVTNSTSSNNVQSSKRSSKDIEVNTTVT-LDTGTVY 330


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 207 SRVKNFHVNLSVAS*LSMTWMKLLCIPHQMELVL 106
           + V  FH      S    T MKLL IPH  E+++
Sbjct: 250 NEVHTFHATCPSCSHQCDTHMKLLDIPHFKEVII 283


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 454 GQSNRMARSRITLFTLSQ--FLVPTLHRVIGWMRHTNPH 564
           G    +A  +  LF LSQ  F+V  +H   GW+  T+ +
Sbjct: 203 GSGRSIALIQAELFALSQPNFIVLPVHNCEGWVNSTSSY 241


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 406 LKYWYRHPHPCSSAGRGQSNRMARSRITL 492
           LK W  HP      GR Q+N   +S I L
Sbjct: 441 LKPWMPHPEGYREFGREQNNATLKSHIGL 469


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 98  FSARTSSIWCGMQRSFIHVIESQLATDKFTWKFFTRLFRVLQ 223
           F+     IWCGM  S +  I     T +FT  F T   RVLQ
Sbjct: 488 FNTGLKGIWCGMILSSVTAI-----TCQFTVLFNTDWHRVLQ 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,184
Number of Sequences: 5004
Number of extensions: 54679
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)