Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28k19
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 31 0.78
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 31 1.0
11_01_0530 - 4164590-4165264,4165378-4165467,4167482-4168011,416... 29 2.4
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 3.1
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 28 5.5
11_06_0001 + 19132777-19133067,19133082-19133381 27 9.6
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 27 9.6
>05_03_0190 +
9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 ECRGVSSTSLRVSWQQINSRGSSLLGYFVYYS-TEDSLWSNTSTPHTELYIQGLLKYTNY 305
E +S +SLR + + ++L F +S TE W + ++Y+QG LK N+
Sbjct: 378 ETARMSPSSLRYYGLGLENGNYTVLLQFAEFSFTETPTWQSLGRRVFDIYVQGALKEKNF 437
Query: 306 SV-KVAGFSNY 335
+ K AG ++
Sbjct: 438 DIRKTAGGKSF 448
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 141 VSSTSLRVSWQQINSRGSSLLGYFVYYSTEDS-LWSNTSTPHTELYIQGLLKYTNYSVKV 317
+S +SLR + + S+ F ++ DS W +T ++Y+QG+LK N+ ++
Sbjct: 397 MSPSSLRYYGLGLENGNYSVKLQFAEFAYPDSKTWESTGRRIFDIYVQGVLKEKNFDIRK 456
Query: 318 A 320
A
Sbjct: 457 A 457
>11_01_0530 -
4164590-4165264,4165378-4165467,4167482-4168011,
4168094-4168603,4172207-4172432
Length = 676
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 437 QGCG*RYQYFNQWRRPGNIL*RNTNDWIREWSQSV 333
Q C R + NQWR GN +T DWIR+ S S+
Sbjct: 465 QSCPQRQDHLNQWR--GN----DTTDWIRKTSNSL 493
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +3
Query: 345 PFSYPIICITLQDVPGPPPLIKXXXXXXXXXXXXWKRPEQPNGEITHYTVHVKP 506
P S ++ + L PGPPPL + W RP P H H +P
Sbjct: 378 PDSRRLLLLLLLPPPGPPPLAQ---APPRHPPRPWCRPHTPRPRSPHSPTHPRP 428
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 129 ECRGVSSTSLRVSWQQINSRGSSLLGYFVYYSTEDSL-WSNTSTPHTELYIQGLLKYTNY 305
E +S++SLR + + ++L F ++ DS W + ++Y+QG LK ++
Sbjct: 514 ETARMSASSLRYYGLGLENGNYTVLLQFAEFAFPDSQGWQSLGKRIFDIYVQGALKEKDF 573
Query: 306 SVK 314
++K
Sbjct: 574 NIK 576
>11_06_0001 + 19132777-19133067,19133082-19133381
Length = 196
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 295 YFSNPWIYNSVCGVLV 248
YFSNPW++ S+ G ++
Sbjct: 161 YFSNPWVFFSLIGAVI 176
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 240 WSNTSTPHTELYIQGLLKYTNYSVKVAGFSNYGLGPF 350
W N E GLL+Y+ + +KV G + L P+
Sbjct: 214 WRNAEKMLEEFVSHGLLEYSKHGMKVEGATTSLLSPY 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,510,966
Number of Sequences: 37544
Number of extensions: 364051
Number of successful extensions: 890
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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