Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k14
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   0.33 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   0.57 
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   1.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   5.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   5.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   5.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   5.3  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    24   7.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   7.0  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 256 WMESYMQLLYHWKLY 300
           W ESY +LL  WKLY
Sbjct: 730 WTESYRELLNRWKLY 744


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 313 HNTLNTISNDITIAYKIPSKQKSPNRHARSATTLTDRYSW------IAATLRLADSWFGT 152
           HN+L +I  ++  +   PS   SP        T+ +R SW       A+T  L+ +  GT
Sbjct: 237 HNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNRDSWSNEVNLSASTNNLSTNTSGT 296

Query: 151 IRRAGLATVRPACWNR 104
           ++   L++ R + +++
Sbjct: 297 LKPYSLSSSRSSSYSK 312


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 325 KRLLHNTLNTISNDITIAYKIPSKQKSPNRHARSATTLTDRYS 197
           +R L +  + +   + ++ +IPSK+KS N      +T+  RYS
Sbjct: 42  RRGLISGASLVKRRMLVSVEIPSKEKSYNAFLHWMSTVPKRYS 84


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 310 NTLNTISNDITIAYKIPSKQKSPNRHARSATTL 212
           + LNT  ND+ ++  I  K+ S ++ A  + +L
Sbjct: 212 SNLNTADNDLALSSTIEGKKTSTSKEALESESL 244


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 205  RYSWIAATLRLADSWFGTIRRAGLATVR 122
            R +W A+     D W   IRR G+A +R
Sbjct: 1116 RNAWEASQRSTKDDWQEWIRRLGVALLR 1143


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 235 HARSATTLTDRYSWIAATLRLADSWFGTIR 146
           +AR    L  +++W A   +L ++W   +R
Sbjct: 377 NAREKNLLNQQFNWTAIVKKLGENWDQLVR 406


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 235 HARSATTLTDRYSWIAATLRLADSWFGTIR 146
           +AR    L  +++W A   +L ++W   +R
Sbjct: 377 NAREKNLLNQQFNWTAIVKKLGENWDQLVR 406


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 114 HAGRTVASPARRIVPNQLSASRNVAAIQEYLSVRV 218
           H GRTV S + +IV      SR++A+ +  L VR+
Sbjct: 520 HLGRTVTSVSLKIVTVNNKRSRHIASRKRAL-VRI 553


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 76   WFASNRFFTWRARR 35
            W  + RFF WR RR
Sbjct: 2155 WTEARRFFYWRLRR 2168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,463
Number of Sequences: 5004
Number of extensions: 21738
Number of successful extensions: 51
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)