Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28k14
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 30 0.52
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 28 2.1
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 28 2.1
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 27 2.8
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 27 4.9
01_06_1070 - 34286660-34287380,34288020-34288094,34288534-342886... 27 4.9
09_03_0094 + 12315923-12316237,12316347-12317504 26 6.4
03_05_0927 - 28874819-28877098,28877689-28877691 26 6.4
01_06_0659 + 30955162-30955377,30955446-30955748 26 6.4
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 26 6.4
03_01_0094 + 749906-750204,751238-751357,751452-751521,751701-75... 26 8.5
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 29.9 bits (64), Expect = 0.52
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = -3
Query: 202 YSWIAATLRLADSWFGTIRRAGLATVRPACWNRYGVVD*YWIWFASNRFFTWRARR*VWX 23
Y + ++ DS G++ + G+ + P + YG + Y +W S + W ++ +
Sbjct: 121 YLGLIGNEKIIDSCVGSVEKYGVGSCGPRSF--YGTIGSYLLWLFSIIYILWPQKKNLAI 178
Query: 22 XWY 14
W+
Sbjct: 179 LWF 181
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 124 RPACWNRYGVVD*YWIWFASNRFFTW 47
R C R G D W W NR F W
Sbjct: 775 RIECIERMGERDGIWTWHRMNRLFNW 800
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 124 RPACWNRYGVVD*YWIWFASNRFFTW 47
R C R G D W W NR F W
Sbjct: 784 RIECIERMGERDGIWTWHRMNRLFNW 809
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 328 FKRLLHNTLNTISNDITIAYKIPSKQKSPNR 236
F LLH+ LNT S D+ I + S KS ++
Sbjct: 1983 FSELLHHLLNTFSKDVDIINYMESFVKSSDK 2013
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 77 DPILVYDTIAIPACRPNRCKPCPSYCTEPAVCKPQRCS 190
+ LV +T+ + A + PC YC VC RC+
Sbjct: 126 EDFLVVNTVPMVAYKDVHYFPCTLYCPCQKVCLSYRCA 163
>01_06_1070 -
34286660-34287380,34288020-34288094,34288534-34288636,
34288866-34289091
Length = 374
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 168 SASRNVAAIQEYLSVRVVADLACLFGDFCLDGILYAIVISL 290
S+SRNV A+ + L ++ + C +G LY++V+ L
Sbjct: 107 SSSRNVMAVDDPLESEEMSAMLCSMAIMSKNGNLYSLVLWL 147
>09_03_0094 + 12315923-12316237,12316347-12317504
Length = 490
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 238 RHARSATTLTDRYSWIAATLRLADSWFGTIRRAGLATVRPACW 110
RH R + W AATL +A + + GLA PA +
Sbjct: 83 RHDRLTVVALGAFLWAAATLLIAMAVTAALNGVGLALQIPAIY 125
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 179 AACRQLVRYNTTGRACNGSACMLES--LWCRRLV 84
A CR VRY+T+G S C ES + CR ++
Sbjct: 644 ATCR--VRYDTSGNIAKCSCCKFESCGILCRHIL 675
>01_06_0659 + 30955162-30955377,30955446-30955748
Length = 172
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 73 TRSNTSLRHHSDSSMQAEPLQALPVVLYRT 162
+RS+ R H+ S + L ALP VLY T
Sbjct: 54 SRSHPPDRQHNHSGLGTTTLHALPCVLYFT 83
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 142 AGLATVRPACWNRYGVVD 89
AG P CWN YGV++
Sbjct: 695 AGAKLADPYCWNAYGVME 712
>03_01_0094 +
749906-750204,751238-751357,751452-751521,751701-751811,
752036-752119,752720-752770,752934-752963,753064-753126,
753234-753299,753400-753516,753956-753991,754387-754506,
754644-754814,754983-755076,755394-755503
Length = 513
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 105 RFQHAGRTVASPARRIVPNQLSA 173
R HAG V SP++ +VP+ +++
Sbjct: 480 RVNHAGIEVVSPSKTVVPSSINS 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,077,108
Number of Sequences: 37544
Number of extensions: 150151
Number of successful extensions: 489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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