Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k14
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    30   0.46 
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    30   0.46 
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    30   0.46 
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    30   0.46 
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   1.1  
AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    27   4.3  
AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...    27   4.3  
Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    26   7.5  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    26   7.5  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    26   7.5  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    26   7.5  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    26   7.5  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    26   7.5  
Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 107 IPACRPNRCKPCPSYCTEPA-VCKP 178
           IP C P  C P P  C +PA VC P
Sbjct: 657 IPCCPPIPCCPQPKICCQPAPVCLP 681


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 107 IPACRPNRCKPCPSYCTEPA-VCKP 178
           IP C P  C P P  C +PA VC P
Sbjct: 302 IPCCPPIPCCPQPKICCQPAPVCLP 326


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 107 IPACRPNRCKPCPSYCTEPA-VCKP 178
           IP C P  C P P  C +PA VC P
Sbjct: 254 IPCCPPIPCCPQPKICCQPAPVCLP 278


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 107  IPACRPNRCKPCPSYCTEPA-VCKP 178
            IP C P  C P P  C +PA VC P
Sbjct: 982  IPCCPPIPCCPQPKICCQPAPVCLP 1006


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 110 PACRPNRCKPCPSYCTEPAVCKPQRC 187
           P   P  C P P  C  P +C PQ C
Sbjct: 31  PPPPPPMCAPPPLPCPPPPICPPQFC 56


>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 207 SVRVVADLACLFGDFCLDGIL 269
           S R++AD A  F D C+DGI+
Sbjct: 237 STRLLADSAVSFTDHCVDGIV 257


>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 207 SVRVVADLACLFGDFCLDGIL 269
           S R++AD A  F D C+DGI+
Sbjct: 410 STRLLADSAVSFTDHCVDGIV 430


>Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical
           protein F54G8.2 protein.
          Length = 812

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 64  YLQTRSNTSLRHHSDSSMQAEPLQAL 141
           +L+ +++TSL++H+ SS  A  LQA+
Sbjct: 394 FLERKTSTSLKNHNFSSHSASLLQAV 419


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 VRNHPYRQVLLDSCNVAACRQLVR 156
           +R  PY  +LLD  N+A C  +++
Sbjct: 389 IRRQPYAFILLDVINMALCMHVLK 412


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 VRNHPYRQVLLDSCNVAACRQLVR 156
           +R  PY  +LLD  N+A C  +++
Sbjct: 389 IRRQPYAFILLDVINMALCMHVLK 412


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 227 VRNHPYRQVLLDSCNVAACRQLVR 156
           +R  PY  +LLD  N+A C  +++
Sbjct: 389 IRRQPYAFILLDVINMALCMHVLK 412


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 4   LSADTXXTKPTSVPSM*KTGYLQTRSNTSLRHHSDSSMQAEPL 132
           + +DT  T   S P   KT     +SN+S +H        +PL
Sbjct: 720 IDSDTNSTTNPSQPETTKTKNNTKKSNSSKKHRKPKKKDVDPL 762


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical
           protein ZK370.4b protein.
          Length = 1353

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 322 RLLHNTLNTISNDITIAYKIPSKQKSPNRHARSATT 215
           RLLH TL T+   + ++ ++  +++  +RH   ++T
Sbjct: 372 RLLHVTLTTLHQYMGLSSELMRRRRDDDRHRNGSST 407


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical
           protein ZK370.4a protein.
          Length = 1342

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 322 RLLHNTLNTISNDITIAYKIPSKQKSPNRHARSATT 215
           RLLH TL T+   + ++ ++  +++  +RH   ++T
Sbjct: 372 RLLHVTLTTLHQYMGLSSELMRRRRDDDRHRNGSST 407


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
           protein Y32H12A.8 protein.
          Length = 3901

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 256 WMESYMQLLYHWKLYLTC 309
           W++ YM++L+  +L+L C
Sbjct: 724 WIQCYMEMLHRLELFLVC 741


>Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical
           protein D1053.4 protein.
          Length = 127

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 222 ADLACLFG--DFCLDGILYAIVISLEIVFNVL 311
           A+L C+    DFC   +L ++ IS  +VF VL
Sbjct: 91  AELMCVCNERDFCNSALLQSLTISFFVVFVVL 122


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 156 PNQLSASRNVAAIQEYLSVRVVADLACLFGDFCLD 260
           P +   S+ +  +   +S+ ++  L+CL GDF  D
Sbjct: 20  PKEKGRSQGIRNLLILISLSIIPYLSCLGGDFVFD 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,791,429
Number of Sequences: 27780
Number of extensions: 124942
Number of successful extensions: 415
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)