Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k14
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   9.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   9.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   9.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   9.1  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 80  PILVYDTIAIPACRPNRCKPCPSYCTEP 163
           P + +D + +PA R  +  PC   C EP
Sbjct: 197 PSVEWDILGVPAERHKKYYPC---CDEP 221


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 307 TLNTISNDITIAYKIPSKQK 248
           TLNT+ ++  +A+K+  +Q+
Sbjct: 397 TLNTLHSEKLLAFKMTEQQQ 416


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +1

Query: 97   HHSDSSMQAEPLQALPVVLYRTSCLQAATLQLSRSTCL*GWLR 225
            HH D           PVVL      +   + L+R+  L  W R
Sbjct: 1100 HHRDLPCVLRASTPAPVVLEAVHASRRVLIVLTRNFLLTEWSR 1142


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 139 GLATVRPACWNRYGVVD 89
           GLA    +CWN +  +D
Sbjct: 319 GLANNTLSCWNEHQSLD 335


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 283 YHWKLYLTCYVINV 324
           Y+ KLY   Y+IN+
Sbjct: 100 YNKKLYYKNYIINI 113


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 283 YHWKLYLTCYVINV 324
           Y+ KLY   Y+IN+
Sbjct: 111 YNKKLYYKNYIINI 124


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 283 YHWKLYLTCYVINV 324
           Y+ KLY   Y+IN+
Sbjct: 341 YNKKLYYKNYIINI 354


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 283 YHWKLYLTCYVINV 324
           Y+ KLY   Y+IN+
Sbjct: 336 YNKKLYYKNYIINI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,639
Number of Sequences: 438
Number of extensions: 1666
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)