Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k13
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148...    35   0.057
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    29   4.9  
09_04_0231 + 15875955-15876005,15876141-15876191,15877911-158779...    28   8.6  
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504...    28   8.6  
02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314     28   8.6  

>01_06_0569 +
           30313337-30313650,30314271-30314353,30314763-30314876,
           30315876-30315938,30316289-30316380,30316464-30316544,
           30316629-30316727,30316795-30316933,30317017-30317165
          Length = 377

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
 Frame = +1

Query: 517 FNSPTVLEKFVTTCDSDHGEGYSSCNLEMSPAGRA-------LFHGYLDTRVPKDG--RI 669
           FNS   L+++    DS++G G SS +LE++  G         LF G L   + +    +I
Sbjct: 152 FNSKDELKRWHLYSDSEYG-GLSSASLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKI 210

Query: 670 KKAGYCAMRSK 702
           +++G+C MRSK
Sbjct: 211 RRSGFCGMRSK 221


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 278 RIIILKSVLYYLILNDGYFGKDIEKEATIQRLKRRIGNI 394
           RI+++  V ++LIL+ GY   ++    T+Q+LK  I +I
Sbjct: 647 RIVLIVWVFFFLILSSGYTA-NLATMLTVQQLKPTINSI 684


>09_04_0231 +
           15875955-15876005,15876141-15876191,15877911-15877976,
           15878073-15878134,15878639-15878717,15878839-15878943,
           15879032-15879142,15879492-15879629,15879821-15879895,
           15880011-15880131,15880196-15880350,15880605-15880679,
           15881124-15881327,15881396-15881536
          Length = 477

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +1

Query: 217 NVITSVKYLRSFSVLCRKSNQDHHLKKCPILFNTQRWLFWERHRKGGY 360
           NV T  K   SF  + R    DHH        +     + E  R+GGY
Sbjct: 251 NVYTENKRFNSFKKVARSLGYDHHDLSIVSFHSVSMGYYGECGRRGGY 298


>02_05_0691 -
           30949234-30949243,30949613-30950001,30950425-30950449,
           30950594-30950688,30950842-30951359,30951652-30951736,
           30951842-30952633
          Length = 637

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 265 RKSNQDHHLKKCPILFNTQRWLFWERHRKGGYDTTIKTSNWEHLKNG 405
           R SN + H+  C IL N +   FW RH    Y ++   S+  +   G
Sbjct: 542 RTSNSEAHVNSCCIL-NPK---FWRRHDASRYSSSFSVSDGRNSSEG 584


>02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314
          Length = 261

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 614 PAGLISRLQEL*PSPWSLSHVVTNFSRTVGLLKHHKR 504
           P G ++ LQ    SP+S +H   N+     +L+H K+
Sbjct: 82  PGGFLNYLQNNKISPFSQTHPFVNYHNARRILRHEKK 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,829
Number of Sequences: 37544
Number of extensions: 311292
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)