Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28k12
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 31 0.12
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 31 0.16
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 29 0.48
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.48
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 29 0.64
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.64
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.84
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.1
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 28 1.5
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 27 1.9
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 27 1.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 2.6
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 2.6
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 27 2.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.4
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 3.4
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 27 3.4
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 27 3.4
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 3.4
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 27 3.4
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 4.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 4.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.5
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 5.9
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 5.9
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 5.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 5.9
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.8
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 25 7.8
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.8
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 144 ECD-NDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVSELVDTSTGES 293
+C+ ND +I+N E D N+ ++N D +Y + E + +++ STG+S
Sbjct: 238 KCERNDIAIINRELDAQDNQLIHTNEDFI--AYAVHREPIIRVIEISTGKS 286
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +3
Query: 153 NDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVSELVDTSTGESKDLNVAFVNTRDD 332
++ + +N ER + SN D + ++ +S L S+D + + +
Sbjct: 106 SNGTFLNFERLAKNSRTILSNGDEIRIGLGVPKDEISFLCQVPVKHSRDSQKNMIKSENS 165
Query: 333 HDAVLNSFG-GTSKILSMSLTENSGGIKYWISFDDCDTTEDIQFGFRRRSTEM 488
H ++ + G GT ++ +++ NSG W + + + + +R+TEM
Sbjct: 166 HYEIIRTLGSGTFAVVKLAVEVNSG---KWYAIKIINKRKILLTSSEKRATEM 215
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 29.5 bits (63), Expect = 0.48
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -2
Query: 403 PLFSVSDIERILDVPPKLFNTAS*S-SLVLTKATFKSLDSPVDVSTNSETNS 251
P S E L++ PKL +T+S +LV T F+S +SP++V++ E+N+
Sbjct: 1329 PYDRTSSKEEPLNLFPKLKDTSSPLWNLVKTSRLFQSSNSPLNVASLQESNN 1380
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.48
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 123 NSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVSELV--DTSTGESK 296
N +++ E D+D+ +E+ D+D +EDN + N+ + + E+ S++V + +
Sbjct: 199 NDDEVEEEDDDDD---DEDEDEDEDEDNNN-----NNRWLLIEQYPSDIVAYENFVSLKR 250
Query: 297 DLNVAFVNTRDDHDAVLNSFGGTSKIL 377
L +V+ D V ++ G SKIL
Sbjct: 251 KLTQLYVSIHDLISYVHLNYTGFSKIL 277
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 114 NIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVSELVDTSTGES 293
+I QDI E + + ++ ER++ S+ ++ + IA + VD T
Sbjct: 454 SIIQLQDIVTEANKEFQLLRAEREERRRYIETSSRELEDKDAEIAAQAYKAKVDQDTSAK 513
Query: 294 KDLNVAFVNTRDDHDAV 344
+ L +AF + D V
Sbjct: 514 QGLLLAFSKSTSDLQVV 530
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 0.64
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Frame = +3
Query: 12 NNVFYELEQKNGKSRQTKTVFTVADSEDIMYT---AINI-FNSQDIDCECDNDNSIVNE- 176
+ V+ E+E ++ +S +V + D++D+MY+ +NI F + D ND+S +E
Sbjct: 1863 DGVYEEMEFEDDQSGSADSVVSEDDADDVMYSDNDDMNIEFMVDEQDASSQNDDSSFDEA 1922
Query: 177 ----------ERDQDYNEDNYSNSDIANHSYTIAEEL---VSELVDTSTGESKDLNVAFV 317
E D D + + D N S +EL E+ + + + + AF
Sbjct: 1923 SSHGDVISIDEEDLDNQGEEFEWEDEDNASSGYEDELDYNEDEVGENDSTTFEAMENAFT 1982
Query: 318 NTRDDHD 338
T D+ D
Sbjct: 1983 ETSDNDD 1989
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 429 DDCDTTEDIQFGFRRRSTEMPSFIVIDSKIE-KRVTKNHSSDNEGESNDIPFDLNAIGND 605
+D ED Q ++ ST PS + + S I +T + S N SNDI + +
Sbjct: 129 EDTTDVEDTQKLEQKHSTT-PSSLKMKSSISLAAITADDSLHNSFSSNDIDDGFQTVTSS 187
Query: 606 IDVPKKKCIYELRKRE 653
KKK L KR+
Sbjct: 188 RSYGKKKSTEPLTKRQ 203
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 75 TVADSEDIMYTAINIFNSQDID-CECDNDNSIVNEERDQDYNEDNYSNSD 221
TV E ++ NI N + D E DNDN N+ + N +N +N+D
Sbjct: 502 TVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTD 551
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 75 TVADSEDIMYTAINIFNSQDID-CECDNDNSIVNEERDQDYNEDNYSNSD 221
TV E ++ NI N + D E DNDN N+ + N +N +N+D
Sbjct: 502 TVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTD 551
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 150 DNDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVSEL 269
D++ ++EE + E+ SDI N S T AEE+ S+L
Sbjct: 128 DHEEMRISEENGPSHIENLNFFSDIDNFSKTSAEEIASKL 167
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 445 VVSQSSKDIQYFIPPLFSV---SDIERILDVPPKLFNTAS*SSLVLTK 311
VVS+ S Q+ IPPL ++ D+E I ++ +L N + L+ TK
Sbjct: 579 VVSEMSSFTQFIIPPLLTIVNELDLETINNLFSQLLNRTNAVYLIQTK 626
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 331 SSLVLTKATFKSLDSPVDVSTNS 263
SS + T AT+++L SPV ST S
Sbjct: 232 SSSITTNATYQNLPSPVSTSTTS 254
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.6
Identities = 32/180 (17%), Positives = 71/180 (39%)
Frame = +3
Query: 36 QKNGKSRQTKTVFTVADSEDIMYTAINIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSN 215
+ N S + + + SED ++ + + + E + +S + + +EDN S+
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 237
Query: 216 SDIANHSYTIAEELVSELVDTSTGESKDLNVAFVNTRDDHDAVLNSFGGTSKILSMSLTE 395
S ++ + E +S ES+ + ++ + D+ +S +S S S +E
Sbjct: 238 SSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSE 297
Query: 396 NSGGIKYWISFDDCDTTEDIQFGFRRRSTEMPSFIVIDSKIEKRVTKNHSSDNEGESNDI 575
+S S D D++ + G T + S ++ +S + +S+ I
Sbjct: 298 DSDSTS---SSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKI 354
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 69 VFTVADSEDIM---YTAINIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDIANHSY 239
VF D E+ M + A FNS ++ D +NS + ER+++ +DN S ++ Y
Sbjct: 127 VFDDGDIEEDMNKIHDAWYAFNSHELS---DEENSDSSNEREEEVEDDNRSVESYSSSDY 183
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/52 (21%), Positives = 29/52 (55%)
Frame = +3
Query: 87 SEDIMYTAINIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDIANHSYT 242
++++ A+N+ S+D+ D +++ E + D+ + ++ SD+ N +T
Sbjct: 266 ADELGAIAVNVALSRDVTKFPKQDGTLLLAEEETDWPKQFFTRSDLENRIWT 317
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = -3
Query: 405 LHYSRSVTSKEF*MYRQNYSIQHRDHL------SY*QKLHSNL 295
+HYSR+ + + R+ YS QH HL Y LHSN+
Sbjct: 931 IHYSRNQREEAENILRRRYSKQHSKHLESVVYEEYHPILHSNI 973
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 276 TSTGESKDLNVAF-VNTRDDHDAVLNSFGGTSKILSMSLTEN 398
TS+ ++ +N +N ++H +LNSFG T+ +S S+ N
Sbjct: 1451 TSSSSTQPINSTIPINPLENH-GMLNSFGSTTVSISFSVLTN 1491
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 84 DSEDIMYTAINIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVS 263
D ++ +++ +F+ D+ E + + ++NE D + D +NH E
Sbjct: 228 DKDEKTWSSNELFSIDDLRAEL-SCSYVINEVSTSDKQFCALAFGDFSNH------ETKF 280
Query: 264 ELVDTSTGESK 296
LVDTSTGE K
Sbjct: 281 VLVDTSTGELK 291
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +3
Query: 213 NSDIANHSYTIAEELVSE-LVDTSTG----ESKDLNVAFVN-TRDDHDAVLNSFGGTSKI 374
+ ++ +S T+ +E + E L + TG S+ + VAF + + D +LN F
Sbjct: 435 SEELTQNSETLCKEKLKEKLEELFTGFEFEVSEAVEVAFQKLSHNVWDTLLNEFLAAQ-- 492
Query: 375 LSMSLTENSGGIKYWISFDDCDTTEDIQFGFRRRS 479
+ ++ + + +++ DD TTE+ F++ S
Sbjct: 493 -NTTIEKIKNIVPFYVDIDDTKTTEEYIINFKKNS 526
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 144 ECDNDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELV 260
E D DNS + + EDNY N D+++ ++ + V
Sbjct: 294 EADLDNSSIASSNRTQHTEDNY-NKDVSDAQNSLGQSAV 331
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Frame = +3
Query: 81 ADSEDIMYTAINIFNSQDIDCECDNDNS-IVNEERDQDYNE---------DNYSNSDIAN 230
ADS +++ T + +NS+D+ + +N+ + +N + D E DN+ NSDI
Sbjct: 84 ADSSNLLPTYL--YNSEDLSNDTENNETKSINGKSALDLKEPHHSELHDNDNFQNSDINI 141
Query: 231 HSYTIAEELVSELVDTSTGESKDLNVA 311
S+ E ++ T +S L +A
Sbjct: 142 ESFKGDIEASGSILTTHENKSFTLKLA 168
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 144 ECDNDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVSEL 269
E ++DN VN+E+ Q ED N+ A + +E V++L
Sbjct: 243 EEESDNEQVNDEKKQSSEEDTTENNSAAE----VIDETVNDL 280
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +3
Query: 36 QKNGKSRQTKTVFTVADSEDIMYTAIN------IFNSQDIDCECDNDNSIVNEERDQDYN 197
+KN K + TK D + +I+ + S+D+D E D EER N
Sbjct: 222 RKNQKKKSTKQNIEATTENDALSESISTPDIQKVAQSEDVDAEQDTVADSKEEERRDIAN 281
Query: 198 EDNYSNSD 221
+D N++
Sbjct: 282 DDLIVNAN 289
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +3
Query: 174 EERDQDYNEDNYSNSDIANHSYTIAEELVSELVDTSTGESKDLNVAFVNTRDDHDAVLNS 353
E+ Q ED + + S A+ L E++D G+ + L R+D + L+
Sbjct: 688 EKNIQTLKEDLRKSEEALRFSKLEAKNL-REVIDNLKGKHETLEAQ----RNDLHSSLSD 742
Query: 354 FGGTSKILSMSLTENSGGIK 413
T+ ILS LT++S +K
Sbjct: 743 AKNTNAILSSELTKSSEDVK 762
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2
Query: 523 FSILLSITIKLGISVLLRLKPN*ISSVVSQSSKDIQYFIPPLFSV 389
FS LLS+ I L I LLR K N + K + +I PL+S+
Sbjct: 38 FSSLLSV-ILLCIFTLLRTKFNTYDRCIPPMKKSLWGWIEPLWSI 81
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 631 IHFFFGTSISFPIAFKSKGISFDSP 557
IH T I FPI F +K F++P
Sbjct: 789 IHLLKSTGIIFPIEFTTKPAVFEAP 813
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 120 FNSQDIDCECDNDNSIVNEERDQDYNEDNY--SNSDIANHSYTIAE 251
FN D+ + +N+E ++ ED Y NSD S ++A+
Sbjct: 419 FNESDLKNMASRIETFINDEASNNHREDFYGVKNSDTDTDSDSLAD 464
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 5.9
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = +3
Query: 144 ECDNDNSIVNEERDQDYNEDNYSNS-DIANHSYTIAEELVSE--LVDTSTGESKDLNVAF 314
+CDN +V+ +DYN ++Y + + T+ + V E ++ S S++ +
Sbjct: 1172 DCDNGAVLVDGVNVRDYNINDYRKQIALVSQEPTLYQGTVRENIVLGASKDVSEEEMIEA 1231
Query: 315 VNTRDDHDAVLNSFGGTSKILSMSLTENSGGIKYWIS 425
+ H+ +L G + + + SGG K I+
Sbjct: 1232 CKKANIHEFILGLPNGYNTLCGQKGSSLSGGQKQRIA 1268
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 7.8
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -2
Query: 601 FPIAFKSKGISFDSPSLSLE*FFVTRFSILLSITIKLGISVLLRLKPN*ISSVVSQSSKD 422
+P F + +S S S ++FS+ S+ IS K + ++SV S +S +
Sbjct: 121 YPTNFFTTSVSASSDSFPNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHN 180
Query: 421 I-----QYFIPPLFSVSDIERILDVPPKL 350
F+PP+ + S + + +P L
Sbjct: 181 AVPFTPHAFVPPVNNASPLPALNTLPQLL 209
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 134 ILTIKYINRCVHYIFAIRDSEDGF 63
+LT+ + RC I AI D+ED F
Sbjct: 345 LLTLGMLCRCTKRIIAITDAEDKF 368
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 4 IYTIMSFTNSNRKMGNLDKQKPSSLSRIAKI 96
I M F+ S K+G+LD ++PSS +A++
Sbjct: 312 IKEFMQFSQS-LKIGSLDSKQPSSTKSVAEV 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,218
Number of Sequences: 5004
Number of extensions: 56615
Number of successful extensions: 269
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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