Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28k12
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 34 0.11
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 34 0.11
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 33 0.26
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 33 0.26
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 32 0.34
Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 32 0.45
AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein. 32 0.45
Z72506-4|CAA96619.1| 590|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL023828-8|CAE53737.1| 125|Caenorhabditis elegans Hypothetical ... 28 5.5
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 28 5.5
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 28 5.5
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 28 5.5
AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical ... 28 7.3
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 27 9.7
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 27 9.7
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 592 AFKSKGISFDSPSLSLE*FFVTRFSILLSITIKLGISVLLRLKPN 458
+F +S+DSP LS FF+ F I+ I + + + VL R K N
Sbjct: 1241 SFSIGEVSYDSPGLSSSLFFIIMFFIIFMIALIICLIVLYRRKSN 1285
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
Length = 1951
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 592 AFKSKGISFDSPSLSLE*FFVTRFSILLSITIKLGISVLLRLKPN 458
+F +S+DSP LS FF+ F I+ I + + + VL R K N
Sbjct: 1247 SFSIGEVSYDSPGLSSSLFFIIMFFIIFMIALIICLIVLYRRKSN 1291
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 471 RRSTEMPSFIVIDSKIEKRVTKNHSSDNEGESNDIPFDLNAIGNDIDVPKK--KCIYELR 644
++ TE P I + I+ + NH+++++ E + P + G D ++ +K +YE
Sbjct: 756 KKRTETPPSSPIQNHIQNHL--NHNTESDSEEEEEPARVQDDGKDAEIAEKDDDFVYERL 813
Query: 645 KREYSSWPP 671
+ E S PP
Sbjct: 814 REELSPQPP 822
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 471 RRSTEMPSFIVIDSKIEKRVTKNHSSDNEGESNDIPFDLNAIGNDIDVPKK--KCIYELR 644
++ TE P I + I+ + NH+++++ E + P + G D ++ +K +YE
Sbjct: 756 KKRTETPPSSPIQNHIQNHL--NHNTESDSEEEEEPARVQDDGKDAEIAEKDDDFVYERL 813
Query: 645 KREYSSWPP 671
+ E S PP
Sbjct: 814 REELSPQPP 822
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 32.3 bits (70), Expect = 0.34
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Frame = +3
Query: 273 DTSTGESKDLNVAFVNTRDDHDAVLNSFGGTSKILSMSLTENSGGIKYWISFDDCDTTED 452
D +G S ++ + DD+D + + + + S+ + Y ++ D
Sbjct: 657 DEDSGLSGVVSYKILTKSDDYDGIFHLDSTSGSLRSLKAFDAEKKRSYTFEYEAKD---- 712
Query: 453 IQFGFRRRSTEMPSFIVIDS---KIEKRVTKNHSSDNEGESNDIPFDLNAIGNDIDVPKK 623
G ++T P+ I I+ + K ++ +++ G+SN+ + A ND+DV +
Sbjct: 713 --LGTPSKTTNCPATIFIEDVNDNVPKFGSRYYTATISGKSNETVAIVQANDNDVDVKNQ 770
Query: 624 KCIYEL 641
K Y L
Sbjct: 771 KLQYHL 776
>Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical
protein T23D8.1 protein.
Length = 568
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 456 QFGFR-RRSTEMPSFIVIDSKIEKRVTKNHSSDNEGESNDIPFDLNAIGNDIDVPKKKCI 632
+FGF+ + F V D + K + SS+++ SND+ F ++ I N++ + KKC
Sbjct: 125 KFGFQWPDQLDCNKFPVTDLCVGKN--SSESSNSKKSSNDVTFGVSTIANEVVLSPKKCP 182
Query: 633 YEL 641
+ +
Sbjct: 183 HHM 185
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 596 NRIQIERNIIRFAFIVTRMIFRHAFL 519
N IQ E+NII F F + + +F+H FL
Sbjct: 381 NIIQWEKNIIGFIFYIVKWLFKHLFL 406
>AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein.
Length = 568
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 456 QFGFR-RRSTEMPSFIVIDSKIEKRVTKNHSSDNEGESNDIPFDLNAIGNDIDVPKKKCI 632
+FGF+ + F V D + K + SS+++ SND+ F ++ I N++ + KKC
Sbjct: 125 KFGFQWPDQLDCNKFPVTDLCVGKN--SSESSNSKKSSNDVTFGVSTIANEVVLSPKKCP 182
Query: 633 YEL 641
+ +
Sbjct: 183 HHM 185
>Z72506-4|CAA96619.1| 590|Caenorhabditis elegans Hypothetical
protein F07A5.3 protein.
Length = 590
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 408 IKYWISFDDCDTTEDIQFGFRRRSTEMPSF 497
I Y I +D+ DTT D GFR R+ E ++
Sbjct: 332 IGYHIGYDEWDTTSDNNVGFRYRNIEKRNY 361
>AL023828-8|CAE53737.1| 125|Caenorhabditis elegans Hypothetical
protein Y17G7B.5b protein.
Length = 125
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 84 DSEDIMYTAINIFNSQDIDCECDNDNSIVNEERDQDYNE----DNYSNSDIANHS 236
D++D + +FN++D D E + ++ ++ ++DY E D YS S + + S
Sbjct: 21 DADDDVDGIDEMFNNEDEDPEDEEGENLFGDDMERDYREQPELDQYSESGMDDAS 75
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 84 DSEDIMYTAINIFNSQDIDCECDNDNSIVNEERDQDYNE----DNYSNSDIANHS 236
D++D + +FN++D D E + ++ ++ ++DY E D YS S + + S
Sbjct: 21 DADDDVDGIDEMFNNEDEDPEDEEGENLFGDDMERDYREQPELDQYSESGMDDAS 75
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 627 ISSSAHRYHSQSHSNRK 577
+SSS H +HS H NRK
Sbjct: 106 VSSSTHHHHSNRHENRK 122
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 627 ISSSAHRYHSQSHSNRK 577
+SSS H +HS H NRK
Sbjct: 151 VSSSTHHHHSNRHENRK 167
>AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical
protein Y59A8B.3 protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 656 ILPFAQFINTFLLRHIDIIPNRIQIERNIIRFAFIVTRMIFRH 528
ILP A I F+ +H D I N I + I T M+ H
Sbjct: 255 ILPVAYIITAFITKHFDQIANNIALNFIAIHGLVSSTVMLIAH 297
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 111 INIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDI 224
+NI N +D++ E D D+ EE ++ NE++Y SDI
Sbjct: 260 LNIENLEDLNNE-DEDSENEKEEEIEE-NEEDYDQSDI 295
>Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical
protein T10G3.2 protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 421 IQYFIPPLFSVSDIERI 371
I YFIPPL ++ IERI
Sbjct: 107 ISYFIPPLIAIGIIERI 123
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 111 INIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDI 224
+NI N +D++ E D D+ EE ++ NE++Y SDI
Sbjct: 260 LNIENLEDLNNE-DEDSENEKEEEIEE-NEEDYDQSDI 295
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 165 IVNEERDQDYNEDNYSNSDI--ANHSYTIAEELVSELVDTSTGESKDLN 305
I N R+QDY+ ++ + ++Y +AE+L + L +STG + + N
Sbjct: 1041 IANFFRNQDYSNPTVIDTTLHPLKNTYVVAEQLAASLNRSSTGVAHNGN 1089
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,444
Number of Sequences: 27780
Number of extensions: 303242
Number of successful extensions: 1188
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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