Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k12
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.5  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 NDNSIVNEERDQDYNEDNYSNSDIANHSY 239
           ++N+I N     +YN +NY+N++     Y
Sbjct: 85  SNNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 NDNSIVNEERDQDYNEDNYSNSDIANHSY 239
           ++N+I N     +YN +NY+N++     Y
Sbjct: 85  SNNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 183 DQDYNEDNYSNSDIANHSYTIAEEL 257
           + +YN +NY+N +  N++Y   ++L
Sbjct: 93  NNNYNNNNYNNYNYNNNNYNNYKKL 117



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 150 DNDNSIVNEERDQDYNEDNYSN 215
           +N+N   N   + +YN +NY+N
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNN 113



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 171 NEERDQDYNEDNYSNSDIANH 233
           N   + +YN  NY+N++  N+
Sbjct: 94  NNYNNNNYNNYNYNNNNYNNY 114


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 612 HRYHSQSHSNRKEYHSIR 559
           HR HS++   RKE   +R
Sbjct: 56  HRQHSKNEQQRKEMEQMR 73


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 NDNSIVNEERDQDYNEDNYSNSDIANHSY 239
           ++N+I N     +YN +NY+     N +Y
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 NDNSIVNEERDQDYNEDNYSNSDIANHSY 239
           ++N+I N     +YN +NY+     N +Y
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 NDNSIVNEERDQDYNEDNYSNSDIANHSY 239
           ++N+I N     +YN +NY+     N +Y
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 NDNSIVNEERDQDYNEDNYSNSDIANHSY 239
           ++N+I N     +YN +NY+     N +Y
Sbjct: 86  SNNTIHNNNYKYNYNNNNYNKKLYYNINY 114


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +3

Query: 171 NEERDQDYNEDNYSNSDIANHSYTIAEELVSELVD 275
           N     +YN +NY+N++  N+     ++L   +++
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 153 NDNSIVNEERDQDYNEDNYSNS 218
           N+N+      + +YN +NY+N+
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNN 346


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 648 FCAVHKYISSSAHR-YHSQSHSN 583
           FC + KY  S AH+  + ++ SN
Sbjct: 237 FCGLQKYTRSFAHQSINKEARSN 259


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 536 FRHAFLDLTIDNNK 495
           F   FL+LT++NN+
Sbjct: 408 FEEYFLNLTVENNR 421


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 648 FCAVHKYISSSAHR-YHSQSHSN 583
           FC + KY  S AH+  + ++ SN
Sbjct: 232 FCGLQKYTRSFAHQSINKEARSN 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,177
Number of Sequences: 438
Number of extensions: 4548
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)