Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k11
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    82   7e-17
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.29 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.66 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    28   1.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.5  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.2  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   8.2  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   8.2  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 40/81 (49%), Positives = 58/81 (71%)
 Frame = +3

Query: 285 GIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRG 464
           G+AKGVG+ +I+G +H   ++I   +L   F+V+E + +DMLLGLDML+R+Q  IDL+  
Sbjct: 155 GVAKGVGMAKILGCVHSAPLKIGDLYLPCRFTVIEGRDVDMLLGLDMLRRYQACIDLENN 214

Query: 465 VLRIGTTGTETPFLPESDLPE 527
           VLRI   G E PFL ES++P+
Sbjct: 215 VLRI--HGKEIPFLGESEIPK 233


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
 Frame = -1

Query: 616 SRASRICLSSWSLTDWFTMSSSETPDRRAHSGRSDSGRNGVSVPVVPIRRTPRLRSMLH* 437
           S +S    SS S +   + SSS +    + S  S S  +  SVP+     +    S    
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSS---- 221

Query: 436 CRLSISRPSSISMGCSSSTENEVVKKSCSILICTM*MRPMILCTPTPLAIPAH-AKIVNS 260
              S S  SS S    SS+ + +   S S  I T+ + P    + T   +P+  A +  +
Sbjct: 222 ---SSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALN 278

Query: 259 SSGASTSTML 230
           +S AS  T L
Sbjct: 279 ASKASNHTSL 288


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 631 PCLDLSRASRICLSSWSLTDWFTMSSS-ETPDRRAHSGR 518
           P +DLS A R C  SW+  D F ++S+     R  HS R
Sbjct: 539 PTVDLSPAQRGCQDSWNYLDHFDIASAHRNVYRNIHSIR 577


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 176  RTTTYTSIEVPNDPTIQLYSDDVVDGQEVERRNPISQMLAYRQKDLLDFK 27
            R T Y     PN PTI L+ + + + +E ++R+ +  + +  +  +L FK
Sbjct: 924  RHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFK 973


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 717 KKYSFFILYSTHFFL*KN*IFVTSFCRAHLAWTSRGLLGSVS 592
           + +SFFIL++  +    + +  TS  +  LA  SRGLL SV+
Sbjct: 474 QSWSFFILFNICYNKAYSSMLTTSCKKEILAAASRGLLNSVT 515


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 200 LALSELQSRTTTYTSIEV--PNDPTIQLYSDDVVDGQEVERRNPISQMLAYRQKDLLD 33
           L ++E +  T  Y   E+   NDPT+ LY+D        E  + +   L + Q D  D
Sbjct: 51  LKVTERKEDTQDYNEPELHNSNDPTVDLYADTYATQAATESDSELEDAL-FSQLDEFD 107


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 356 LFDSHLHHVNATDDPLYANTF 294
           L DSH HH+NA++    + +F
Sbjct: 490 LLDSHAHHLNASEGSKSSGSF 510


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 427 LNGI-SATSTSNVVFYGSARPVPRRRSCQ-NLIF-QNAPVC 540
           LNG  +  S+S+   YGS    P  RSC  N++F ++  VC
Sbjct: 290 LNGPPNQESSSSASSYGSRTQTPNARSCSLNIVFHKHKKVC 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,586
Number of Sequences: 5004
Number of extensions: 62373
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)