Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k11
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50068-3|AAD47115.1|  389|Caenorhabditis elegans Hypothetical pr...    65   4e-11
Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF125971-9|AAD14764.1|  442|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U50068-3|AAD47115.1|  389|Caenorhabditis elegans Hypothetical
           protein C01G5.6 protein.
          Length = 389

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
 Frame = +3

Query: 288 IAKGVG-VQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRG 464
           +A+GVG  ++I G+IH+  +++E    +  F V+  + MD+L+GL++L++H C I+LK  
Sbjct: 290 MARGVGGTEKIEGKIHLCDVKVEDAHFSCPFEVMARREMDLLIGLNVLRKHGCCINLKTS 349

Query: 465 VLRIGTTGTETPFLPESDL 521
            L  G  GT TPFL  +++
Sbjct: 350 RLEFG-NGTTTPFLQSNEI 367


>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 325 RPMILCTPTPLAIPAHAKIVNSSSGASTST 236
           +P++ CTPTP + PA   I  +    + ST
Sbjct: 698 KPVVSCTPTPTSTPASGIITEAPKKEAPST 727


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -2

Query: 534 GRILEDQILAGTASRYRSCRSVEHHV*GRCCTDAV*AYQDRAAYPWAVPLAQRTRSSRSP 355
           G + +  +  G     R+C   E    G  CT      ++   +P A+P  + +    SP
Sbjct: 694 GVVCKKPLKCGVHVCQRTCHGEECEKEGEKCTKKCETIRELCEHPCALPCHEDSPCEPSP 753

Query: 354 VRFS-SAPCECDR 319
            + S    CEC R
Sbjct: 754 CKASVRISCECGR 766


>AF125971-9|AAD14764.1|  442|Caenorhabditis elegans Hypothetical
           protein Y4C6B.1 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 242 INNVSQISIEDERVLALSELQSRTTTYTSIEVP-NDPTIQLYSDDVVDGQEVERRNPISQ 66
           I++ + +  + +  + L+EL  +  TY       ND    L +DD+ DG  ++RR+   +
Sbjct: 112 ISSRNMLEYKKDAKVILNELCDQNITYKMPRYTLNDMEEILLTDDLEDG-VIQRRSEKWE 170

Query: 65  MLAYRQKDLLD 33
            L  RQK + D
Sbjct: 171 CLPERQKPMFD 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,372,166
Number of Sequences: 27780
Number of extensions: 357712
Number of successful extensions: 1100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)