Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k06
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.7  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   3.6  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.7  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   4.7  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.2  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.2  

>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 291 YGQVIHR-TYTGVTGDELHHSGWNVCSSCHDN 383
           Y   IH+ TY+GV   E   +G+ +   CHDN
Sbjct: 2   YNDQIHKITYSGVEVFEYTINGFPLMKRCHDN 33


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 12  DFDLVKKMLLFIQNNIDTEISSTLWKTC*TILYITGEVLEFFMLKG 149
           D+ ++  ++L+   + DTE+ S       T L +  E LEF ++ G
Sbjct: 511 DYQIILPVVLYSLQSKDTEVRSRALNLILTFLELRNENLEFSIIYG 556


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 401 VSLQCRVVMATRTHIPAAVMQFVSCYSRVGAVNDLAVCCGFR 276
           +S+Q R  +    H PAA++ F+SC S +  +  L +    R
Sbjct: 359 LSVQLRWFITYIFHPPAAMILFISCTSFISGILQLVLLNNIR 400


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 716 TSWYGXIPKIVAKFSMIFPLSPRSCHF 636
           TSW G + K+   F   +P  P  C F
Sbjct: 51  TSWEGGLYKLTMAFPEEYPTRPPKCRF 77


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 333 DELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVD 449
           DEL+H  WN     H N   +   L++   +    Y  D
Sbjct: 473 DELYHGEWNTVPGHHKNPKCRAKKLVVESRNGRREYVQD 511


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 628 RLWK*QERGLRGKIMLNLATIFGIXPYHD 714
           R+W  Q+RGL    +  LA  +GI   HD
Sbjct: 798 RIWNAQKRGLSINNLEELAKKYGINSIHD 826


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 424 IPAMSTPLTSGPILG 468
           IPA ST  TSGP++G
Sbjct: 556 IPAASTSATSGPVVG 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,459
Number of Sequences: 5004
Number of extensions: 62021
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)