Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k06
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...   208   3e-54
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    34   0.099
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     31   0.92 
11_01_0605 + 4821363-4823246                                           29   4.9  
02_05_0636 + 30536717-30537022,30538836-30538952,30539026-305394...    28   6.5  

>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score =  208 bits (508), Expect = 3e-54
 Identities = 101/186 (54%), Positives = 120/186 (64%), Gaps = 4/186 (2%)
 Frame = +3

Query: 153 GPGYASPLDAFNNGPREELLYVVCVRPNK--NKQDYLATVDVDSKSATYGQVIHRTYTGV 326
           GPGYA+PL+A   GPRE+LLYV CV      NK DYL TVDVD  S TY QVIHR     
Sbjct: 16  GPGYATPLEAMEKGPREKLLYVTCVYNGTGINKPDYLGTVDVDPNSPTYSQVIHRLPVTH 75

Query: 327 TGDELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVDVGTDPRKPRLHKVIDGSKM 506
            GDELHHSGWN CSSCH + +  R  LI+P L S  VY VD   DPR P LHKV++   +
Sbjct: 76  VGDELHHSGWNACSSCHGDPSASRRFLILPSLLSGRVYVVDTLKDPRAPALHKVVEAEDI 135

Query: 507 -RSFNCSFPHTTHCLATGEIMISTMGDENENGKGD-FVLIDSKTLEVTGTWTKGKNHAKF 680
                  FPHT+HCLA+GEIMIS +GD+  N  G+ F+L+DS+   V G W K  +   F
Sbjct: 136 AEKTGLGFPHTSHCLASGEIMISCLGDKEGNAAGNGFLLLDSE-FNVKGRWEKPGHSPLF 194

Query: 681 GYDFWY 698
           GYD+WY
Sbjct: 195 GYDYWY 200


>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 306 HRTYTGVTGDELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAV 446
           +  +T      LHH GW+   SC  N  +  D L  PG   C+ Y +
Sbjct: 165 YSNFTATFTSSLHHHGWSTNGSCTTNGRVNSDGL-CPGTACCDAYGM 210


>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 195 PREELLYVV-CVRPNKNKQDYLATVDVDSKSATYGQVIHRTYTGVTGDELHHSGWNV 362
           P E L  ++ C +PN+N   +LATVD+D + A     +  +   + G EL ++ W +
Sbjct: 272 PPEALAGLIKCEKPNRNIYGFLATVDLDGRRAV---SLGTSNIMLRGCELKNTAWAI 325


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 520 QLNDLIFEPSITLCNRGFLGSVPTSTA*TLQE 425
           QL+DL    S+ L + GF G VPTS A +L++
Sbjct: 175 QLSDLPKLRSLNLSSNGFEGPVPTSIATSLED 206


>02_05_0636 +
           30536717-30537022,30538836-30538952,30539026-30539478,
           30539589-30540647
          Length = 644

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 392 QCRVVMATRTHIPAAVMQFVSCYSRVGAVNDLAVCCGFRINVHCCKIVL 246
           Q   V A R  I A ++Q +   SR GA+++        ++ H CKI +
Sbjct: 517 QANKVRAVRAGILAPLIQMLQDSSRNGAIDEALTILSVLVSHHECKIAI 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,362,561
Number of Sequences: 37544
Number of extensions: 409485
Number of successful extensions: 1015
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)