Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k04
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    31   0.11 
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    28   1.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.5  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   5.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   7.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   9.7  

>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 178 YFSVSYLIASFDNLEIILRCHALG*SHLYQYVSTTLT*NSHQIFWPFSYI-NWHMTDKT 5
           +F+V+ L  +FDN EI     ALG   +Y YV T    ++    WP   + +W+++  T
Sbjct: 123 FFTVNGLTGTFDNYEIYASLMALG---VYPYVPTLTGFSTFLGVWPTGTMRDWYLSQTT 178


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +1

Query: 229 IRPSCNTRDSGQNKPSFNFVNNEQEDKEADCEDVPILVERSKALHELIVS---KKKSPND 399
           ++ S    DS +N P    +N + +  E+D +D+PI   R+ +   +  S   K+     
Sbjct: 27  MKESDEESDSSENHPLSESLNKKSKS-ESDEDDIPIRKRRASSKKNMSNSSSKKRAKVMG 85

Query: 400 NNGLKQKNET 429
           N GLK   +T
Sbjct: 86  NGGLKNGKKT 95


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 200 YTFCSDKLLFSFIFDSFIRQFGD 132
           Y+F SD + +SF  DSFI++  D
Sbjct: 722 YSFLSDLVQYSFQPDSFIKEAAD 744


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 286 VNNEQEDKEADCEDVPILVERSKALHEL-IVSKKKSPNDNNGLKQKN 423
           VNN  E +  +  ++ I+   S +L E    S++K+ NDNNGL + N
Sbjct: 153 VNNSVEPQMENTANITIV---SPSLKESDFESEEKATNDNNGLIETN 196


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
 Frame = +1

Query: 217 LISDIRPSCNTRDSGQ--NKPSFNFVNNEQEDKEADCED------VPILVERSKALHELI 372
           L++D     N     Q  + P  N      E+KE+D +       + I    SK  HE  
Sbjct: 53  LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKN-HETS 111

Query: 373 VSKKKSPNDNNGLKQKNETE 432
           +S  KS  DNN  K  NE +
Sbjct: 112 LSPSKSTIDNNERKLDNEID 131


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 559 QRAISSLLI*VYLGCQNQGNYFLHFLLNCLCSQIDLFLNWPLVPFHSSV 413
           +R +SSLL    +        ++H  L CLC  ++  L + L P  SSV
Sbjct: 278 KRMLSSLLRYASIAFSESFQGWIH--LKCLCVYVESILRYGLPPDFSSV 324


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 250 RDSGQNKPSFNFVNNEQEDKEADCEDVPILV-ERSKALHEL 369
           RD   N  +  F+NNE+E+ E +  +V + +  R+  L  L
Sbjct: 459 RDLNLNFENSEFLNNEEENDEDELSNVLVSIPSRTSVLERL 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,141
Number of Sequences: 5004
Number of extensions: 47021
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)