Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k04
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical p...    27   8.9  
AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 190 QNVYLTYVCLISDIRPS-CNTRDSGQNKPSFNFVNNEQEDKEADCEDVPILVERSKALHE 366
           QN  L Y C+I  +RP    TR S  ++      N +  D   D  DV I ++R+  L E
Sbjct: 496 QNNLLEYFCMIDFVRPKYLGTRKSFIDRFEKPIKNGQCVDSSPD--DVKIALQRTHVLVE 553

Query: 367 LI 372
           L+
Sbjct: 554 LV 555


>Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical
           protein F17A2.13 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = +1

Query: 223 SDIRPSCNTRDSGQNKPSFNFVNNEQEDKEADCEDVPILVERSKALHELIVSKKKSPNDN 402
           +D++ + + +++ +N+    F  NE E KE    + PIL   S+    L + K     DN
Sbjct: 99  ADVQENFDEQENAKNENDEVFYENENEAKEL--VETPILRSLSRQFSGLTIIKSHIKKDN 156

Query: 403 NGLKQKN 423
             ++ ++
Sbjct: 157 LDVESRS 163


>AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical
           protein F33E11.3 protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 295 EQEDKEADCEDVPILVERSKALHELIVSKKKSPNDNNGLKQK 420
           ++ED+E D +D P L E  K + E++   +++P  ++ LK +
Sbjct: 456 DEEDEEEDFKDAPELPEEPKTVPEVV---EEAPKTHDHLKSE 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,749
Number of Sequences: 27780
Number of extensions: 255492
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)