Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k02
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    24   4.4  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    24   5.8  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    23   7.7  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    23   7.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    23   7.7  

>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 281 LIKTSTVFVWYKTNKFLKNKF*SLDK*INKMQNFSIQHYN*VENSINK*NIHS 123
           L KT   F+  KTNK  KN+  SL K  +K  N  I+ +  + N+  + N+H+
Sbjct: 57  LFKTLRNFLSLKTNKVPKNRKFSLLK-GSKCNNVEIKVF--IRNNDKQSNVHN 106


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 244 VLYHTNTVEVLIKNAYSI 297
           +L H N  EV+++NAY +
Sbjct: 789 LLVHDNQAEVVVQNAYDV 806


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 88  DIYDA*YFYLNTNKLKYTNI 29
           DI+D  Y Y   N L YT +
Sbjct: 190 DIFDTPYMYQQINTLNYTRL 209


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 247 LYHTNTVEVLIKNAYSIK 300
           +Y T  VE+L KNAY  K
Sbjct: 615 VYRTRAVELLKKNAYPSK 632


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 83  NVD*FTLCSFSDNLNEYSIYLCYSQPNYNA 172
           N+  FT C F+D       Y  Y   N NA
Sbjct: 244 NIKEFTSCEFNDRSRTLLNYAGYMDTNKNA 273


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 220  NLFLRNLFVLYHTNTVEVLIKNAYSIKKK 306
            N  LR  FVL H+N +   +K  +  + K
Sbjct: 1040 NSLLREAFVLLHSNNIMERLKQEFEERYK 1068


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,315
Number of Sequences: 5004
Number of extensions: 20962
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)