Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k02
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    32   0.091
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    26   4.5  
Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    26   6.0  
U80030-6|AAG24164.1|  367|Caenorhabditis elegans Serpentine rece...    25   7.9  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 304 FFLLNMHF*LKLPQYSYGIKRTNFLKINFNLSTNKL 197
           FFL+N H  L +PQ+   IKR NF K N N  ++K+
Sbjct: 252 FFLMNRHLTL-IPQFLVSIKRFNFPKFN-NFPSSKM 285


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 173 VLKNFAFC*FICR-EIKIYF*EICSFYTIRI 262
           VL  F  C  + R E K +F  +C+FYT R+
Sbjct: 40  VLSGFLMCMLLKRAETKPFFTVVCTFYTRRL 70


>Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical
           protein F59A2.4a protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 265 QYSYGIKRTNFLKINFNLSTNKLTKCKI 182
           +Y YG +  N     F++S + +T CKI
Sbjct: 303 RYFYGTRANNLYPFTFDVSFDDVTLCKI 330


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = +2

Query: 5   FKLGHALIYICVF*FVCIQVKVLCIINVD*FTLCSFSDNLNEYSIYLCYSQPNYNAVLKN 184
           FKL   L+ I +F +   Q  V  II V        S  L     YLC ++ N   + KN
Sbjct: 254 FKLTTILMLIIIFLYDSEQAFVFHIIMVTDV----MSTPLIVQISYLCNNKRNIRTLFKN 309

Query: 185 FAFC*FI 205
           F F  F+
Sbjct: 310 FKFANFV 316


>U80030-6|AAG24164.1|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein119 protein.
          Length = 367

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 10  IRTCPNLYLCILICLYSSKSIMH-HKCRLV 96
           + TC +L++C++I     KS +H   C LV
Sbjct: 322 LNTCTHLFVCLIISSQYRKSTIHAFTCGLV 351


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 135 LFIYAILNLIIMLY*KILHFVNLFVERLKFIFKKFVRFI 251
           L I+  L L+   + KIL F N F  RLK   K    F+
Sbjct: 415 LLIFFTLRLVFFRFLKILEFNNFF--RLKLRIKTIFNFL 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,310,500
Number of Sequences: 27780
Number of extensions: 116032
Number of successful extensions: 237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)