Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k01
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0315 - 27822379-27823899                                         31   1.2  
03_04_0069 - 17022468-17023361                                         30   1.6  
09_04_0258 - 16175258-16176069,16176111-16176414                       29   2.7  
08_01_1065 - 10868890-10869999,10870925-10871004,10871224-108712...    29   4.8  
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281...    28   6.3  
10_05_0033 - 8415692-8415738,8416084-8416174,8416568-8416821,841...    28   8.3  
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    28   8.3  

>02_05_0315 - 27822379-27823899
          Length = 506

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -1

Query: 449 PAARRRLYEGPVAYRGPGAV 390
           PAA RRL+EGPVA    GAV
Sbjct: 329 PAALRRLFEGPVALDSAGAV 348


>03_04_0069 - 17022468-17023361
          Length = 297

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 545 GQRGVERG--DERVQRVREQHHERAHR-QQVGGPAPAARRRLYEGPVAYR 405
           G+RGV RG    R  RVR      A R + +G P  A RRRL  G V  R
Sbjct: 248 GRRGVRRGRAGARGARVRRVGGRAARRVRHLGAPPCAPRRRLRRGGVRRR 297


>09_04_0258 - 16175258-16176069,16176111-16176414
          Length = 371

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 539 RGVERGDERVQRVREQHHERAHRQQVGGPAPAARRRLYEG-PVAYRGPGA 393
           +G  +GD+   ++RE+  ++  R+    P  + RR+  +G  +A R  GA
Sbjct: 288 QGFRQGDQEAAQLREEEQQQERRRPAAFPGASGRRKARDGHGMARRRGGA 337


>08_01_1065 -
           10868890-10869999,10870925-10871004,10871224-10871283,
           10871490-10871678,10871931-10872092,10872989-10873100
          Length = 570

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -1

Query: 479 AHRQQV-GGPAP-AARRRLYEGPVAYRGP 399
           A RQ++ GG  P A ++RLY GP +Y+GP
Sbjct: 330 AMRQRLSGGVQPDAPQQRLYMGPFSYQGP 358


>03_06_0110 -
           31727376-31727381,31727554-31727664,31728071-31728133,
           31729202-31729331,31729532-31729701,31729800-31729859,
           31729941-31730018,31730108-31730197,31730275-31731118,
           31731220-31731281,31731362-31731423,31731511-31731700
          Length = 621

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +3

Query: 378 TDLVHSTGAAIGNGALIQAAAGSGR 452
           TD+V S   A GNGA I AAAG  R
Sbjct: 583 TDVVGSGVPAAGNGAEITAAAGDAR 607


>10_05_0033 -
           8415692-8415738,8416084-8416174,8416568-8416821,
           8417473-8417482
          Length = 133

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 404 GPGAVYKVGGARAAAGPQQTQRV 336
           GP  +++VG ARA AGP    R+
Sbjct: 7   GPRKIWRVGAARAVAGPAAQPRL 29


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 479 AHRQQVGGPAPAARRRLYEGPVAYRGPGAVYKVGGARAAAGPQQTQRV 336
           AH+Q  G P     RR+      +R P A+ +      A  PQQ  R+
Sbjct: 742 AHKQVDGTPEARQLRRIEFSSSKFRSPPALARFNSRNNALSPQQKLRL 789


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,824
Number of Sequences: 37544
Number of extensions: 268173
Number of successful extensions: 1176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)