Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28k01
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    32   0.35 
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    31   0.61 
AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    31   0.61 
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    31   0.80 
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    31   0.80 
Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical p...    29   3.2  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    29   3.2  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    29   3.2  
Z78016-4|CAC42335.1|  359|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    28   5.7  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    28   7.5  
Z35604-4|CAA84678.1|  442|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL031630-14|CAA20993.1|  185|Caenorhabditis elegans Hypothetical...    27   9.9  

>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +3

Query: 81  NENDLVKQQNKIMEQVKNENFKLPSMIMCGDHSSFTKTELNAKEPKPEEVDKIREKSSTS 260
           NE D   +Q   +E+ K E  ++ S+I   +  +  KTE ++   K   ++  R KS TS
Sbjct: 718 NEQDARIRQ---LEREKKEGERIRSIIAKWEKRNIPKTEKSSPMKKVPPIENFRAKSQTS 774

Query: 261 CAKLSP 278
              LSP
Sbjct: 775 ITGLSP 780


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -1

Query: 236 LVNFFGLRFLRVQLRLSEGGMVSTHDHT---RELEIFVFNLFHDFILLFN*IVFIVSKMY 66
           +VNF  L FL   L LS   M ST D T     ++I+V+N F   ++  N  + + + ++
Sbjct: 56  VVNF--LIFLFPTLLLSYNYMSSTLDQTLTITTIDIYVYNEFQSLLIAINRFIAMYAPLH 113

Query: 65  YKKI 54
           Y K+
Sbjct: 114 YNKL 117


>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -1

Query: 188 SEGGMVSTHDHTRELEIFVFNLFHDFILLFN*IVFIVSKMYYKKIMK 48
           SEG ++   + T    IFVF L   F+ L N   F+V K Y+ +I+K
Sbjct: 459 SEGFLIIIDNSTSTFGIFVFFLLFPFLSLHN-HNFVVKKNYFSQIVK 504


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = -2

Query: 292 LREGVGDSFAHDVELFSLILSTSSGFGSF-AFNSVLVKEEWSPHMIILGSLKFS 134
           +REG+GD FA  V++F+  L+   G G F +++  LV   ++P +I+L   K S
Sbjct: 188 VREGLGDKFALLVQMFAAFLA-GYGVGFFYSWSMTLVMMGFAP-LIVLSGAKMS 239


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = -2

Query: 292 LREGVGDSFAHDVELFSLILSTSSGFGSF-AFNSVLVKEEWSPHMIILGSLKFS 134
           +REG+GD FA  V++F+  L+   G G F +++  LV   ++P +I+L   K S
Sbjct: 188 VREGLGDKFALLVQMFAAFLA-GYGVGFFYSWSMTLVMMGFAP-LIVLSGAKMS 239


>Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical
           protein C08B6.1b protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 7/44 (15%)
 Frame = +3

Query: 96  VKQQNKIMEQVKNENFKL---PSMIMCG----DHSSFTKTELNA 206
           V QQ +I+E++KNE+F+L    S+ +CG    DH    KT +NA
Sbjct: 129 VFQQTEILEKLKNEHFELGITESLFICGYPLFDHLG-VKTIINA 171


>Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical
           protein C08B6.1a protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 7/44 (15%)
 Frame = +3

Query: 96  VKQQNKIMEQVKNENFKL---PSMIMCG----DHSSFTKTELNA 206
           V QQ +I+E++KNE+F+L    S+ +CG    DH    KT +NA
Sbjct: 129 VFQQTEILEKLKNEHFELGITESLFICGYPLFDHLG-VKTIINA 171


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 343 CVCCGPAAARAPPTLYTAPGPR*ATGPSYKRRRAAGAGPP 462
           C+ C PA A  P     APGP+   G      ++ G GPP
Sbjct: 131 CITC-PAGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPP 169


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 343 CVCCGPAAARAPPTLYTAPGPR*ATGPSYKRRRAAGAGPP 462
           C+ C PA A  P     APGP+   G      ++ G GPP
Sbjct: 131 CITC-PAGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPP 169


>Z78016-4|CAC42335.1|  359|Caenorhabditis elegans Hypothetical
           protein R186.7 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 84  ENDLVKQQNKIMEQVKNENFKLPSMIMCGDHSSFTKTE-LNAKEPKPEEVDKIREKS 251
           E  + K +    +  K  N +L S ++ G  SSF KTE    ++ K EEV+K  E++
Sbjct: 142 EEKIEKLKETENKDSKQRNRRLFSNLIMGTLSSFKKTEKKTTQQEKQEEVEKKLEET 198


>AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical
           protein Y46D2A.3 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 340 RCVCCGPAAARAPPTLYTAPGPR*ATGPSYKRR 438
           RC C GP   +AP      P PR    P Y ++
Sbjct: 42  RCKCSGPTKRKAPCANRPCPFPRTTCCPGYNKK 74


>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 560 RVPESGQRGVERGDERVQRVREQHH-ERAHRQQVGGPAPAARR 435
           R P+  Q G       V ++++ HH ++  RQQ+  P P+ RR
Sbjct: 106 RPPQQTQNGAPMLRLPVHQIQQAHHLQQQQRQQMQQPMPSRRR 148


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 560 RVPESGQRGVE--RGDERVQRVREQHHERAHRQQV 462
           R P+   R +E  R + R++R +E H++ A +QQ+
Sbjct: 77  RTPDEEARKIEKLRREARIKRSKEVHYDAAEQQQI 111


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 542  QRGVERGDERVQRVREQHHERAHRQQVGGPAPAARRR 432
            Q  ++  +++  RV+ QHH   H Q+  GP  AA R+
Sbjct: 1085 QNQIQVTNQQTHRVQYQHHPVQHNQR-NGPTKAAPRK 1120


>Z35604-4|CAA84678.1|  442|Caenorhabditis elegans Hypothetical
           protein ZK1058.4 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 183 FTKTELNAKEPKPEEVDKIREKSSTSCAKLSP 278
           F + +    E +PEE +K+RE  S   A   P
Sbjct: 56  FEEEDFGVVEEEPEEAEKVREADSDDAAPAQP 87


>AL031630-14|CAA20993.1|  185|Caenorhabditis elegans Hypothetical
           protein Y38H6C.15 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +3

Query: 81  NENDLVKQQNKIMEQVKNENFKLPSMIMCGDHSSFTKTELNAKEPKPEEVDKIREKSSTS 260
           N+ D   +  K  E++  ++ K              K E   +E KP+E +K +EK+   
Sbjct: 76  NKEDKKPESKKSAEKLSKKSDKTKKKTTVSSEDKPEKPEKLTEEEKPKEKEKAKEKTVPV 135

Query: 261 CAKL 272
            +KL
Sbjct: 136 QSKL 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,508
Number of Sequences: 27780
Number of extensions: 203417
Number of successful extensions: 892
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)