Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j21
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583...    30   1.5  
03_04_0158 + 17822049-17822151,17822230-17822443,17822540-178227...    29   2.6  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    29   3.4  
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160...    28   5.9  
08_02_0843 - 21759183-21759556,21760255-21762913                       28   5.9  
08_01_0072 - 513561-513926,514055-514189,514274-514417,514505-51...    28   7.8  
01_01_0381 - 2961422-2963917                                           28   7.8  

>01_05_0772 +
           25056973-25057285,25057678-25058006,25058113-25058360,
           25058481-25059396
          Length = 601

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 477 CDKLVPRKLMLVAGFIRSSHRPSSIIAERLCRCSF--FTSKINLFLS 343
           C  +VPR   L+   ++     SS I +++C C +  FT  I L+L+
Sbjct: 86  CHDIVPRVAPLLQDIVKEYVNTSSYILQKVCACCYVQFTLFIELYLT 132


>03_04_0158 +
           17822049-17822151,17822230-17822443,17822540-17822700,
           17822811-17822956,17824048-17824110,17824199-17824291,
           17824313-17824396,17824736-17824897,17824998-17825104,
           17825715-17825812,17825940-17826208
          Length = 499

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 392 RSAMMELGLCDDLINPATNINFLGTNLSHLSYDLH 496
           RS ++E+G+ +D+ NP T  +F  T++S  +Y  H
Sbjct: 245 RSVLVEIGIAEDMHNPVTYGSF-ATSVSTFNYMCH 278


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 224 ENISSCLIEICKTHDIDGPCLLSFVDRDFHTHPFDQL 334
           EN SS +I   +  D+   C L+ +DR+F   P  ++
Sbjct: 300 ENGSSIIIVTTRISDVGRSCCLNGIDRNFEMEPLSEI 336


>11_08_0011 +
           27612206-27615110,27615211-27615538,27615989-27616059,
           27616962-27617118,27617676-27617709
          Length = 1164

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 249 SIKQLEIFSLCNNSSTSLLPQ--FRISDSIVSLYSSNFIGG 133
           ++ +LEI  L NN  +S LP   FR+   I    S NF+ G
Sbjct: 562 NLTKLEILRLSNNQLSSTLPPSLFRLESLIQLNLSQNFLSG 602


>08_02_0843 - 21759183-21759556,21760255-21762913
          Length = 1010

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -2

Query: 246 IKQLEIFSLCNNSSTSLLPQ---FRISDSIVSLYSSNFIG 136
           +KQL+  +L NNS T ++PQ      S S++   +++F+G
Sbjct: 303 MKQLQQITLFNNSFTGVIPQGLGVNSSLSVIDFINNSFVG 342


>08_01_0072 -
           513561-513926,514055-514189,514274-514417,514505-514744,
           516325-516636
          Length = 398

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -2

Query: 480 KCDKLVPRKLMLVAGFIRSSHRPSSIIAERLCRCSFFTSKINLFL 346
           +C K + + + L A  ++   RP  + +E L     F  +  L +
Sbjct: 203 QCPKKISKAIFLTATMVKDGQRPFDVFSEELASADVFLQESQLLI 247


>01_01_0381 - 2961422-2963917
          Length = 831

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 583 KARGLEDSYSFGLCLPSDLGNCSCDGYS 666
           KA  ++D  S   C+   L NCSC  YS
Sbjct: 382 KAESMQDVDSSDECMKVCLNNCSCTAYS 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,405,923
Number of Sequences: 37544
Number of extensions: 321137
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)