Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j19
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 1.1
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 1.4
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 27 2.5
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 26 5.7
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 7.6
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 7.6
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 7.6
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 25 10.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 10.0
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/92 (23%), Positives = 43/92 (46%)
Frame = +2
Query: 215 KVVFSNCS*YFGRHQSRVTKRSHSHIYRDVETKMVLLWNVAKKRP*LNFPRNLNYDSPSS 394
K++F C+ + S V ++ H+ + + + + + P F N++ S
Sbjct: 1728 KLLFPVCAEMLDMYASLVVEK-HTRNHAAWQPVIATILDSILNLPLELFSENIHTLYFSC 1786
Query: 395 CSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 490
CS+ NL+ + R ++ N+ R+G HIL N
Sbjct: 1787 CSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 462 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 361
LM + ++++ M +P +TL +DGLS F LG
Sbjct: 98 LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 488 NSEIKDVADLKTNNTFHELKNSRNPVILYCHGNSNHRAS 604
N + ++ DLK T E+K S + L H + NH S
Sbjct: 111 NHQYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPS 149
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 229 REYHFPLDRFIVSEHQGQHGN 167
R Y +P D F+VS + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 213 GKWYSLIAVSTLDVIKVELQSEAI 284
G + + V+ LDV+K LQSE+I
Sbjct: 34 GSVITTLTVTPLDVVKTRLQSESI 57
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 NSEIKDVADLKTNNTFHELKNSRN-PVILYCHGNSNHR 598
N +I DV DL T L N N PV+L+C HR
Sbjct: 136 NPDISDVDDL-VRKTLQLLLNKENWPVLLHC-SRGKHR 171
>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 103
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 308 TKMVLLWNVAKKRP*LNFPRNLN 376
TK V LW + RP L+FP+ L+
Sbjct: 8 TKAVALWPKDELRPWLSFPKTLD 30
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +3
Query: 363 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 452
R + TTI R A++ H G+TSTLS RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 539 ELKNSRNPVILYCHGNSNHRASPHRLKIYSVFQE 640
E+ ++NPV+LY G N + + K Y +F E
Sbjct: 127 EITGAQNPVVLYVSG-GNTQVIAYSEKKYRIFGE 159
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 491 SEIKDVADLKTNNTFHELKNSRNPVILYCHGNSN 592
S + D++ + +N FHE+K+S + Y H +SN
Sbjct: 515 SLVCDLSWIYPSNVFHEVKDS---LCFYAHNSSN 545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,293
Number of Sequences: 5004
Number of extensions: 50514
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -