Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j19
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548... 32 0.48
05_01_0136 + 915140-915487,915781-916392 31 0.84
02_01_0413 - 3028946-3031111 31 1.1
06_03_0725 - 23894215-23894412,23894660-23894803,23895058-238951... 30 1.9
07_03_0872 - 22190468-22190575,22190652-22190910,22191005-221911... 29 2.6
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 29 2.6
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736... 28 5.9
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 28 7.8
05_05_0149 - 22733703-22736216 28 7.8
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 7.8
>02_01_0735 +
5484398-5484400,5484670-5484773,5485012-5485138,
5485212-5485306,5485597-5485720,5486523-5486603,
5487177-5487275,5487416-5487583,5487688-5487775,
5487860-5487930,5488000-5488068,5488368-5488499,
5488740-5488946
Length = 455
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 545 KNSRNPVILYCHGNSNHRASPHRLKIYSVFQELNFHVVTFDY 670
+N+ P ++YCHGNS RA + + + N V T D+
Sbjct: 22 ENTSLPCVIYCHGNSGCRADANEAAV--ILLPANITVFTLDF 61
>05_01_0136 + 915140-915487,915781-916392
Length = 319
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/100 (25%), Positives = 44/100 (44%)
Frame = +2
Query: 248 GRHQSRVTKRSHSHIYRDVETKMVLLWNVAKKRP*LNFPRNLNYDSPSSCSVTCGRNLNI 427
G+ ++ + R S + D +TK +L W + K+ ++ N+ S + C LN
Sbjct: 8 GKVETEGSSRERSISWDDEQTKFMLDWYIEYKK-----DQHANFIWKSQHHMKCADALNK 62
Query: 428 EFRSIVDNFLIRLGIWHILPNSEIKDVADLKTNNTFHELK 547
EF V + + H N +I + A K+ N F +K
Sbjct: 63 EFAMGVTSAQVTRHYRHYKENWKIVETALNKSGNGFDAIK 102
>02_01_0413 - 3028946-3031111
Length = 721
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 527 NTFHELKNSRNPVILYCHGNSNHRASP 607
NT H LKN RN +L GN H A P
Sbjct: 416 NTLHILKNLRNLTVLLLGGNFMHEAMP 442
>06_03_0725 -
23894215-23894412,23894660-23894803,23895058-23895126,
23895197-23895267,23895357-23895444,23895522-23895707,
23895805-23895903,23896002-23896082,23896575-23896634,
23896656-23896779,23897026-23897120,23897205-23897331,
23897559-23897662,23897883-23897945
Length = 502
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 548 NSRNPVILYCHGNSNHRASPHRLKIYSVFQELNFHVVTFDY 670
N+ P ++YCHGNS RA + + + N + T D+
Sbjct: 43 NTALPCVIYCHGNSGCRADANEAAV--ILLPSNITLFTLDF 81
>07_03_0872 -
22190468-22190575,22190652-22190910,22191005-22191108,
22191245-22191423,22191565-22191670,22191797-22191940,
22192024-22192179,22192274-22192378,22192483-22192545,
22192993-22192995
Length = 408
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 192 DTIKRSRGKWYSLIAVSTLDVIKVELQSEAILISIAM*KRKW 317
DT S G WY+L+ ++T +V + + ++ I + RKW
Sbjct: 278 DTGTHSLGSWYALVLIATFNVSDLIGRYMPLIEQIKLTSRKW 319
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 560 PVILYCHGNSNHRASPHRLKIYSVFQELNFHVVTFDY 670
P ++YCHGNS RA I + N V T D+
Sbjct: 66 PCVIYCHGNSGCRADASEAAI--ILLPSNITVFTLDF 100
>07_03_0796 +
21572131-21572204,21573427-21573482,21573580-21573671,
21574103-21574205,21574297-21574434,21574654-21574907
Length = 238
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 410 GRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVADLKTNNTFHELK 547
G L+ FR +VDNFL +G W + + + D++ T H+LK
Sbjct: 198 GLKLSPWFRLVVDNFL--MGWWDHVEKGTLNEAVDME---TIHKLK 238
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 515 LKTNNTFHELKNSRNPVILYCHGNSNH--RASPHRLKIYS--VFQELNFHV 655
L+ N+ H L SR V+ CH S+H + R +++S V ++N HV
Sbjct: 432 LQQQNSLHHLVMSRGNVLTQCHLGSDHAEKLLDKRNQLHSELVSSQINEHV 482
>05_05_0149 - 22733703-22736216
Length = 837
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 501 LISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQLDG 385
L + F S+C I + K++T++++ + F P +L G
Sbjct: 699 LENRFSSLCGIQEEISKIATLDKSDEVHFTPFQAAKLQG 737
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 410 GRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVADLKT 523
G L+ FR +VDNFL+R W + +++ D+KT
Sbjct: 254 GIKLSPWFRLVVDNFLMRW--WDHVEQGTLEEAIDMKT 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,231
Number of Sequences: 37544
Number of extensions: 315344
Number of successful extensions: 835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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