Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j19
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical ... 72 4e-13
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 1.3
AC024859-7|AAK29968.1| 550|Caenorhabditis elegans Hypothetical ... 29 4.0
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 28 5.3
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 28 5.3
U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 27 9.2
AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like ad... 27 9.2
AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like ad... 27 9.2
AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like ad... 27 9.2
>AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical
protein Y97E10AL.2 protein.
Length = 345
Score = 71.7 bits (168), Expect = 4e-13
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Frame = +2
Query: 353 LNFPR--NLNYDSPSSCSV-TCGRNLNIEFRSIVDNFLIRLGIWHILPNS---EIKDVAD 514
LNF R N +Y+ +S +V + GR+L++ +S R+G+WHILPN E +
Sbjct: 44 LNFRRLPNTDYNDLASNNVKSIGRSLHLPGKSG------RIGVWHILPNKLSLEWRTEGK 97
Query: 515 LKTNNTFHEL-KNSRNPVILYCHGNSNHRASPHRLKIYSVFQELNFHVVTFDYR 673
T F ++ ++S N +I Y HGNS R HR+++Y++ + N+HVV FDYR
Sbjct: 98 HPTERDFDDMMRDSENQIIFYAHGNSFDRTFYHRVEMYNLLSDCNYHVVCFDYR 151
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 183 RGSTATWNTRTPAVSEAPVAKRSPKTMLRRKYST 82
RGSTA TR P + AP A R+P R +T
Sbjct: 298 RGSTAAPGTRAPPATRAPPATRAPPATTRAPPAT 331
>AC024859-7|AAK29968.1| 550|Caenorhabditis elegans Hypothetical
protein Y71H2AM.13 protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Frame = +2
Query: 476 HILPNSEIKDVADLKTNNTFHELKNSRN----PVILYCHGNSNHRASPHRLKIYSVFQEL 643
H+L D T N F + +N PVILY HG S H+ S+ Q L
Sbjct: 84 HVLSPKTSPQSEDNLTLNIFTPVWTPKNETGFPVILYIHGGGFVSDSAHKYGDMSICQHL 143
Query: 644 ---NFHVVTFDYR 673
+ VVT YR
Sbjct: 144 VTKDVVVVTIQYR 156
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 238 TAIREYHFPLDRFIVSEHQG 179
T+I + FP+ R+IV+EH+G
Sbjct: 751 TSILQERFPMPRYIVTEHEG 770
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 504 SLISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQ 394
S++ F SI Q+ + + LSTIERN + L +Q
Sbjct: 195 SIVCNFLSIMQLKLMKKNLSTIERNLLFSTLASSVIQ 231
>U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated
protein 11, isoform f protein.
Length = 198
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 92 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 127
>U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated
protein 11, isoform c protein.
Length = 657
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 551 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 586
>U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated
protein 11, isoform a protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515
>U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated
protein 11, isoform b protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 428 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 463
>AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 289
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 183 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 218
>AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475
>AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 207 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 103
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,115
Number of Sequences: 27780
Number of extensions: 280655
Number of successful extensions: 923
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -