Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j17
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320     33   0.28 
03_02_0460 - 8654283-8654302,8654669-8654847,8654940-8655125,865...    29   3.4  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    28   6.0  
01_06_1015 + 33819203-33821827                                         28   6.0  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    28   7.9  

>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
          Length = 463

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 559 KRKKKQDTETEQVWKWWEEEKTDDGTKWT 645
           K++ KQD ET +  KW+EE+K  +G K T
Sbjct: 408 KKQGKQDQETCKFLKWFEEDKVVEGAKST 436


>03_02_0460 -
           8654283-8654302,8654669-8654847,8654940-8655125,
           8655626-8655781,8656223-8656431,8657254-8657358
          Length = 284

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 387 NVFFTITNMAFFSFSCS*W-YILFTFIIWRQFRKWLIFKLGHRVVT 253
           N + T + M F+   C  + Y +F  + W   RK     + H VVT
Sbjct: 101 NQYMTSSLMLFYMCQCGFYIYSIFALVAWETRRKDFAVMMSHHVVT 146


>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
            34543642-34543731,34544324-34544390,34544483-34544676,
            34544770-34545510,34545596-34545661,34545783-34545908,
            34545978-34546073,34546153-34546521,34546602-34546724,
            34546802-34546906,34547394-34547531,34547665-34547760,
            34548018-34548275
          Length = 1311

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 146  RMS*KMNLWRWINQS*NVNKMIVMKDMLE-LTQLSHLVTTLCPNLKMSHFLNC 301
            RM  K NL  ++  S    +M+    ML  L +L HLV  +CPNL+    LNC
Sbjct: 1018 RMLSKCNLLEFLEIS--YCEMVTSIRMLHPLDRLKHLVVDICPNLQEIE-LNC 1067


>01_06_1015 + 33819203-33821827
          Length = 874

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 176 WINQS*NVNKMIV-MKDMLELTQLSHLVTTLCPNLK 280
           WI+    ++ ++  +KD++  + L HL+   CPNLK
Sbjct: 712 WISNLERLSSLLEGVKDVVSFSCLKHLLIDCCPNLK 747


>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 151 VIKDEPMEVDQPVLKREQDDSDEGYAGANTTVSSCDYSMSQ 273
           VI  EP E  +PV K EQ+++ E    +N T S+    ++Q
Sbjct: 449 VIPSEPPEDIRPVKKLEQEETKEADEASNETNSAIFSDLNQ 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,673,221
Number of Sequences: 37544
Number of extensions: 171744
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)