Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j17
(680 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U07806-1|AAB60380.1| 761|Homo sapiens DNA topoisomerase I protein. 73 1e-12
U07804-1|AAB60379.1| 761|Homo sapiens DNA topoisomerase I protein. 73 1e-12
M60706-1|AAA61206.1| 765|Homo sapiens topoisomerase I protein. 73 1e-12
J03250-1|AAA61207.1| 765|Homo sapiens TOP1 protein. 73 1e-12
AL035652-1|CAI19767.1| 765|Homo sapiens topoisomerase (DNA) I p... 73 1e-12
AL022394-1|CAI42886.1| 765|Homo sapiens topoisomerase (DNA) I p... 73 1e-12
BC071914-1|AAH71914.1| 601|Homo sapiens topoisomerase (DNA) I, ... 45 2e-04
BC052285-1|AAH52285.1| 601|Homo sapiens topoisomerase (DNA) I, ... 45 2e-04
BC044646-1|AAH44646.1| 602|Homo sapiens TOP1MT protein protein. 45 2e-04
AF349031-1|AAL10791.1| 601|Homo sapiens topoisomerase I protein. 45 2e-04
AF349017-1|AAL05624.1| 601|Homo sapiens topoisomerase I protein. 45 2e-04
>U07806-1|AAB60380.1| 761|Homo sapiens DNA topoisomerase I protein.
Length = 761
Score = 72.5 bits (170), Expect = 1e-12
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +1
Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
P+ +KKK E EQ WKWWEEE+ +G KW FLEHKGPVFAP
Sbjct: 184 PDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAP 225
>U07804-1|AAB60379.1| 761|Homo sapiens DNA topoisomerase I protein.
Length = 761
Score = 72.5 bits (170), Expect = 1e-12
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +1
Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
P+ +KKK E EQ WKWWEEE+ +G KW FLEHKGPVFAP
Sbjct: 184 PDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAP 225
>M60706-1|AAA61206.1| 765|Homo sapiens topoisomerase I protein.
Length = 765
Score = 72.5 bits (170), Expect = 1e-12
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +1
Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
P+ +KKK E EQ WKWWEEE+ +G KW FLEHKGPVFAP
Sbjct: 188 PDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAP 229
>J03250-1|AAA61207.1| 765|Homo sapiens TOP1 protein.
Length = 765
Score = 72.5 bits (170), Expect = 1e-12
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +1
Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
P+ +KKK E EQ WKWWEEE+ +G KW FLEHKGPVFAP
Sbjct: 188 PDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAP 229
>AL035652-1|CAI19767.1| 765|Homo sapiens topoisomerase (DNA) I
protein.
Length = 765
Score = 72.5 bits (170), Expect = 1e-12
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +1
Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
P+ +KKK E EQ WKWWEEE+ +G KW FLEHKGPVFAP
Sbjct: 188 PDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAP 229
>AL022394-1|CAI42886.1| 765|Homo sapiens topoisomerase (DNA) I
protein.
Length = 765
Score = 72.5 bits (170), Expect = 1e-12
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +1
Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
P+ +KKK E EQ WKWWEEE+ +G KW FLEHKGPVFAP
Sbjct: 188 PDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAP 229
>BC071914-1|AAH71914.1| 601|Homo sapiens topoisomerase (DNA) I,
mitochondrial protein.
Length = 601
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 607 WEEEKTDDGTKWTFLEHKGPVFAP 678
WE+EK +DG KW LEHKGP FAP
Sbjct: 42 WEKEKHEDGVKWRQLEHKGPYFAP 65
>BC052285-1|AAH52285.1| 601|Homo sapiens topoisomerase (DNA) I,
mitochondrial protein.
Length = 601
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 607 WEEEKTDDGTKWTFLEHKGPVFAP 678
WE+EK +DG KW LEHKGP FAP
Sbjct: 42 WEKEKHEDGVKWRQLEHKGPYFAP 65
>BC044646-1|AAH44646.1| 602|Homo sapiens TOP1MT protein protein.
Length = 602
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 607 WEEEKTDDGTKWTFLEHKGPVFAP 678
WE+EK +DG KW LEHKGP FAP
Sbjct: 43 WEKEKHEDGVKWRQLEHKGPYFAP 66
>AF349031-1|AAL10791.1| 601|Homo sapiens topoisomerase I protein.
Length = 601
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 607 WEEEKTDDGTKWTFLEHKGPVFAP 678
WE+EK +DG KW LEHKGP FAP
Sbjct: 42 WEKEKHEDGVKWRQLEHKGPYFAP 65
>AF349017-1|AAL05624.1| 601|Homo sapiens topoisomerase I protein.
Length = 601
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 607 WEEEKTDDGTKWTFLEHKGPVFAP 678
WE+EK +DG KW LEHKGP FAP
Sbjct: 42 WEKEKHEDGVKWRQLEHKGPYFAP 65
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.132 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,526,133
Number of Sequences: 237096
Number of extensions: 1007620
Number of successful extensions: 5591
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5591
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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