Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j17
(680 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80064-1|AAC24158.1| 972|Drosophila melanogaster DNA topoisomer... 74 2e-13
M74557-1|AAA28951.1| 972|Drosophila melanogaster topoisomerase ... 74 2e-13
BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p pro... 74 2e-13
AE014298-2126|AAN09660.1| 581|Drosophila melanogaster CG6146-PB... 74 2e-13
AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC... 74 2e-13
AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA... 74 2e-13
BT011334-1|AAR96126.1| 338|Drosophila melanogaster SD18110p pro... 29 4.5
AY119531-1|AAM50185.1| 301|Drosophila melanogaster GH17344p pro... 29 4.5
AF145617-1|AAD38592.1| 594|Drosophila melanogaster BcDNA.GH0352... 29 4.5
AE014134-167|AAF51446.1| 338|Drosophila melanogaster CG4291-PA ... 29 4.5
>U80064-1|AAC24158.1| 972|Drosophila melanogaster DNA topoisomerase
I protein.
Length = 972
Score = 73.7 bits (173), Expect = 2e-13
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 538 DDGISPNKRKK-KQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
+ +SP KR+K K E E+VW+WWEEEK DG KW+ LEHKGPVFAP
Sbjct: 405 EPAVSPGKRQKAKAKVEEEEVWRWWEEEKRADGVKWSTLEHKGPVFAP 452
>M74557-1|AAA28951.1| 972|Drosophila melanogaster topoisomerase I
protein.
Length = 972
Score = 73.7 bits (173), Expect = 2e-13
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 538 DDGISPNKRKK-KQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
+ +SP KR+K K E E+VW+WWEEEK DG KW+ LEHKGPVFAP
Sbjct: 405 EPAVSPGKRQKAKAKVEEEEVWRWWEEEKRADGVKWSTLEHKGPVFAP 452
>BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p
protein.
Length = 974
Score = 73.7 bits (173), Expect = 2e-13
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 538 DDGISPNKRKK-KQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
+ +SP KR+K K E E+VW+WWEEEK DG KW+ LEHKGPVFAP
Sbjct: 407 EPAVSPGKRQKAKAKVEEEEVWRWWEEEKRADGVKWSTLEHKGPVFAP 454
>AE014298-2126|AAN09660.1| 581|Drosophila melanogaster CG6146-PB,
isoform B protein.
Length = 581
Score = 73.7 bits (173), Expect = 2e-13
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 538 DDGISPNKRKK-KQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
+ +SP KR+K K E E+VW+WWEEEK DG KW+ LEHKGPVFAP
Sbjct: 14 EPAVSPGKRQKAKAKVEEEEVWRWWEEEKRADGVKWSTLEHKGPVFAP 61
>AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC,
isoform C protein.
Length = 974
Score = 73.7 bits (173), Expect = 2e-13
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 538 DDGISPNKRKK-KQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
+ +SP KR+K K E E+VW+WWEEEK DG KW+ LEHKGPVFAP
Sbjct: 407 EPAVSPGKRQKAKAKVEEEEVWRWWEEEKRADGVKWSTLEHKGPVFAP 454
>AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA,
isoform A protein.
Length = 974
Score = 73.7 bits (173), Expect = 2e-13
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 538 DDGISPNKRKK-KQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
+ +SP KR+K K E E+VW+WWEEEK DG KW+ LEHKGPVFAP
Sbjct: 407 EPAVSPGKRQKAKAKVEEEEVWRWWEEEKRADGVKWSTLEHKGPVFAP 454
>BT011334-1|AAR96126.1| 338|Drosophila melanogaster SD18110p
protein.
Length = 338
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 556 NKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGP 666
N ++KKQ E Q +K EE T + +W +E K P
Sbjct: 233 NPKEKKQKEERRQTFKTEEEAATKEIGQWQTVEVKAP 269
>AY119531-1|AAM50185.1| 301|Drosophila melanogaster GH17344p
protein.
Length = 301
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 556 NKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGP 666
N ++KKQ E Q +K EE T + +W +E K P
Sbjct: 196 NPKEKKQKEERRQTFKTEEEAATKEIGQWQTVEVKAP 232
>AF145617-1|AAD38592.1| 594|Drosophila melanogaster BcDNA.GH03529
protein.
Length = 594
Score = 29.5 bits (63), Expect = 4.5
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = -2
Query: 79 NQNCKIHSI---CSLRCRCIHYK 20
N++C H+ C+ RCRC+H+K
Sbjct: 247 NESCPTHTYGQGCAQRCRCVHHK 269
>AE014134-167|AAF51446.1| 338|Drosophila melanogaster CG4291-PA
protein.
Length = 338
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 556 NKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGP 666
N ++KKQ E Q +K EE T + +W +E K P
Sbjct: 233 NPKEKKQKEERRQTFKTEEEAATKEIGQWQTVEVKAP 269
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.314 0.132 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,288,270
Number of Sequences: 53049
Number of extensions: 295709
Number of successful extensions: 937
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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