Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j17
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    60   1e-09
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    60   1e-09
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    29   4.1  
U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    28   7.1  
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +1

Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
           P K+K K++ + E +W+WW+EEK   G KW  L+H GP+FAP
Sbjct: 158 PPKKKVKKEEDIEDIWEWWKEEKKPAGVKWNSLQHCGPLFAP 199


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +1

Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
           P K+K K++ + E +W+WW+EEK   G KW  L+H GP+FAP
Sbjct: 230 PPKKKVKKEEDIEDIWEWWKEEKKPAGVKWNSLQHCGPLFAP 271


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +1

Query: 553 PNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHKGPVFAP 678
           P K+K K++ + E +W+WW+EEK   G KW  L+H GP+FAP
Sbjct: 230 PPKKKVKKEEDIEDIWEWWKEEKKPAGVKWNSLQHCGPLFAP 271


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 70  CKIHSICSLRCRC 32
           C+I SICSLRC C
Sbjct: 779 CRIRSICSLRCLC 791


>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 538 DDGISPNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEH 657
           D+ +SP++++KK+D E        EE +TD+  +W+   H
Sbjct: 548 DEEMSPSEKRKKRDEEK-------EEPETDEDNRWSKRTH 580


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 349 LFVQLVVYPLHFHHLEAVQKVAH 281
           L++ ++ YP HF  +E ++ VAH
Sbjct: 76  LYIHMLGYPAHFGQMECMKLVAH 98


>AL110479-5|CAB60314.2|  397|Caenorhabditis elegans Hypothetical
           protein Y105C5B.7 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 580 TETEQVWKWWEEEKTDDGTKWTFLEHKGP 666
           TET+  +KW +E+   +  KWT +    P
Sbjct: 225 TETQAQYKWLQEDLAQNKKKWTIVMFHRP 253


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 547 ISPNKRKKKQDTETEQVWKWWEEEKTDDGTKWTFLEHK 660
           +S N+ KKK +T  + + K  E++K + GTK    E K
Sbjct: 1   MSANREKKKLETVIKNLEKKIEDQKANAGTKKKEAEQK 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.132    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,810
Number of Sequences: 27780
Number of extensions: 162531
Number of successful extensions: 435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)