Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j16
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0585 + 30155021-30155910,30156130-30157006 30 1.5
03_05_0821 - 27960414-27961253 29 3.6
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 29 4.7
01_05_0135 + 18460416-18460482,18460614-18460942 29 4.7
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272... 28 6.2
05_05_0290 - 23879064-23880035 28 6.2
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 8.3
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435... 28 8.3
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48... 28 8.3
>02_05_0585 + 30155021-30155910,30156130-30157006
Length = 588
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 490 AFKRNGMQDQEHSKLLGATNFLVRCPRDVSIECDVCARPVKVGDPAKVPPCTS 648
A+KR + ++H G L+RC + +PV++ P K+PP TS
Sbjct: 518 AYKRGATEIKQHPFFEGVNWALIRCASPPEVP-----KPVEIERPPKLPPSTS 565
>03_05_0821 - 27960414-27961253
Length = 279
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 128 FLLHLRIQPDVRNHPRATRACHTAHN 205
FLLH R+ P HPRA RA H+
Sbjct: 50 FLLHRRVVPLPSPHPRALRAVSALHS 75
>02_01_0502 -
3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 487 TAFKRNGMQDQEHSKLLGATNFLVRCPRDVSIECD 591
T+ N + +E+S L +F++RCPRD+S C+
Sbjct: 290 TSASENDEELREYS-LQALESFMLRCPRDISPYCE 323
>01_05_0135 + 18460416-18460482,18460614-18460942
Length = 131
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 86 IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRACHTAHNLWFTVVT 226
I+ KT PR LLHL + P RN TR C +L ++
Sbjct: 63 ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109
>06_03_0434 +
20725996-20726026,20726300-20726947,20727168-20727230,
20727300-20727458,20727750-20728247,20729068-20729321,
20729448-20729829,20729938-20730204,20730530-20730789
Length = 853
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 152 VGYEDVTRTGATANGPQSSG*QYCIFINFYPVLKFVI 42
V EDV R A N G + C+F+ Y KF I
Sbjct: 448 VNTEDVIRARANRNNNDDPGNRLCVFVRDYYCYKFQI 484
>05_05_0290 - 23879064-23880035
Length = 323
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 580 IECDVCARPVKVGDPAKVPPCTSKPGLGCCL 672
+ C VC ++VG AK PC K C L
Sbjct: 197 VSCSVCLDDLEVGSQAKQMPCEHKFHSSCIL 227
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 489 CYWKLLHNTAVFVSITRYDIFCLDWLASRLTTSWTA 382
C W++LHN + D WLAS L T+ +A
Sbjct: 214 CVWEVLHNAGEVIHEGAEDTILWWWLASGLYTAKSA 249
>09_03_0032 +
11742279-11742398,11743318-11743359,11743394-11743555,
11743768-11743888,11744104-11744195,11744271-11744371,
11744592-11744949
Length = 331
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 627 RRVAHFDGPRAHV-AFNGNVPGTTYKEI 547
+R A DG R V AF+ NVPGTT K+I
Sbjct: 250 QRQAIVDGLRDSVLAFSENVPGTTAKDI 277
>01_01_0061 +
483116-483757,483891-484046,484171-484262,484410-485076
Length = 518
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 411 PTSQDKICHTVLSIRRRPYCAKVSSNSVQAERNARSRAFEAV 536
P+S D++C + S ++RP + +++ A+ A EA+
Sbjct: 242 PSSDDELCSSATSSKKRPSTSTRVPEAMEQREQAQKAALEAL 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,249
Number of Sequences: 37544
Number of extensions: 385020
Number of successful extensions: 1102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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