Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j06
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0924 - 22660615-22660623,22661035-22661193,22661664-226625...    31   0.67 
03_06_0316 + 33091194-33091370,33091451-33092155                       30   1.6  
08_01_0131 + 1050028-1050459,1051599-1051701,1052338-1052393,105...    30   2.1  
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028           29   2.7  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    29   3.6  
08_02_1040 - 23873354-23874509,23875645-23875796                       28   8.3  
01_06_0808 + 32134765-32136570                                         28   8.3  

>08_02_0924 -
           22660615-22660623,22661035-22661193,22661664-22662539,
           22663009-22663119,22663528-22663556,22663690-22663762,
           22664804-22665100,22665193-22665345,22665979-22666068,
           22667520-22667809,22667860-22668349
          Length = 858

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 93  VFLEDSNEMEKPDEKGFVNVTWPSRSVPHGGIFHTKTVHRTPAQQEFIKVLLEESKLSIV 272
           VF +DSN + KP E+  + +    R+ P   +F       T    + + ++L +  +++ 
Sbjct: 403 VFRDDSNSLSKPSEEAVIEIAKYRRASPKSRVFFRSMEVITSYFPDSLFLILTQWSVALQ 462

Query: 273 QRHN 284
           + HN
Sbjct: 463 KAHN 466


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 495 GDCGEARELKSKPVEKP--AKKTATLPSNKEMWNEILNQIRER 617
           GD   A+E K+K    P  A+ TAT P   EM +E +  ++ER
Sbjct: 29  GDSKPAKEAKAKKAAAPRKARSTATHPPYAEMISEAIATLKER 71


>08_01_0131 +
           1050028-1050459,1051599-1051701,1052338-1052393,
           1052517-1052693,1052820-1052933,1053057-1053386
          Length = 403

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -1

Query: 397 RIAEKDRRREVRGLVKGNLSWTSLVFEMTSCLRNLRTSLCRCTMLSLDSSKRTFINSCC 221
           +I ++D     R +   N SW   +   T C  N    +C  + LS D  KR      C
Sbjct: 152 KIIQRDLNGIARKVDTSNRSWDKFMLTETICSLNRHKDICISSSLSADLQKRLLFWGDC 210


>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
          Length = 482

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 672 CLCADPLLPTAPFHSA-TPHVHEFDSIFHSTFLYWTVMSQ--FSSLVFLQVSILIRVLLH 502
           C  A+P++       A   H +     F +    WTV+ Q   S+  F++VSI  R+  H
Sbjct: 250 CYWANPVMEIIVEEDAKVVHSYVQQQSFAAAHTKWTVVQQNTSSNYEFVEVSIGARLNRH 309

Query: 501 NLHL 490
           NLH+
Sbjct: 310 NLHV 313


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 417 EDVYRPIKRGEDREVLKDRLSRLMSDGDCGEARELKSKPVEKPAKKTATLPSN 575
           E + RPI R    ++LK      ++          + +P  KPAKK    P N
Sbjct: 125 EGINRPITRSFGAQLLKKAQENAVAANKIVVQNPARKEPAPKPAKKVVPRPEN 177


>08_02_1040 - 23873354-23874509,23875645-23875796
          Length = 435

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 511 ASPQSPSDIKRESLSFNTSLSSPRLIGRYTSSSNMPEARIAEKDRRR 371
           A  +SP D++  S S  + L++ RL+   T +S +  AR    DRRR
Sbjct: 255 AEYRSP-DLQARSPSIASELAAVRLVLLVTGASGLDAARARPDDRRR 300


>01_06_0808 + 32134765-32136570
          Length = 601

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 567 PSNKEMWNEILNQIRERVEWLSEMEQLGEAGPHRDIV 677
           P N   + E+L +IR+  E L  +   GEA  H +++
Sbjct: 48  PQNSFQYLEVLYKIRQLTERLGSLHPGGEAKEHNELI 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,365,178
Number of Sequences: 37544
Number of extensions: 373237
Number of successful extensions: 1155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)