Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j05
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 52 4e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 4e-04
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 38 7e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 36 0.005
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 31 0.10
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 31 0.14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 31 0.14
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 31 0.14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 2.2
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 2.2
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 2.9
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub... 25 5.1
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 8.9
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 8.9
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 52.4 bits (120), Expect = 4e-08
Identities = 33/120 (27%), Positives = 55/120 (45%)
Frame = +3
Query: 156 YGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNXTQTG 335
YGGDE+ A+V DPG R+G++ ED PK +P+ G + DG
Sbjct: 6 YGGDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG------------EFSDG------ 47
Query: 336 SKTGSELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWDLFXXMLDYCYSKVIRSPSEHHP 515
R ++ PGME++ +++G V+NWD+ + Y + +++ HP
Sbjct: 48 -------RRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 39.1 bits (87), Expect = 4e-04
Identities = 27/95 (28%), Positives = 43/95 (45%)
Frame = +3
Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNXTQTGSKT 344
+EI +LV DPG R GYA E++P +P+ GV T
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV--------------------RSDVT 47
Query: 345 GSELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWD 449
G ++ + ++H P PGMEV+ +G + +W+
Sbjct: 48 GRN-KYVVDELQIHAPIPGMEVKNGKSNGIIQDWE 81
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 38.3 bits (85), Expect = 7e-04
Identities = 33/117 (28%), Positives = 50/117 (42%)
Frame = +3
Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNXTQTGSKT 344
+EI ALV D G + G+A +D P+A P++VG P H + G Q S
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG-RPRHH------GIMVG-MGQKDSYV 54
Query: 345 GSELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWDLFXXMLDYCYSKVIRSPSEHHP 515
G E + + L P ++ G V+NWD + + + +R E HP
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 35.5 bits (78), Expect = 0.005
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Frame = +3
Query: 180 LVFDPGHHSLRVGYAQEDTPKADIPAVVGV-------GPATHIPNSEEKVPDGNXTQTGS 338
++ D G ++GYA D P P V+ GPA S G+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSY-MASKGSGHLSSK 66
Query: 339 KTGSELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWDLFXXMLDYCYSKVIRSPSEHH 512
+ +L +I L G + ++ GQ++NWD K +R E H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 31.1 bits (67), Expect = 0.10
Identities = 24/94 (25%), Positives = 42/94 (44%)
Frame = +3
Query: 168 EIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNXTQTGSKTG 347
E +V D G ++VGYA+++ P+ P++VG I +EEK GN G
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVG----RPILRAEEKT--GNVQIKDVMVG 55
Query: 348 SELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWD 449
E + ++ P ++ + + Q+ WD
Sbjct: 56 DEAEAVRSLLQVKYPMENGIIRDFEEMNQL--WD 87
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.14
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 99 NFYNSIIKEYIMSGPN-GMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGP 275
NFY EY+MSG + G + D++ A + H E P+ AV G+
Sbjct: 677 NFYGQN-DEYVMSGSDDGRFFIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDS 735
Query: 276 ATHIPNSEEKVPDG 317
I N+E P G
Sbjct: 736 TVKIFNTENTPPSG 749
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 30.7 bits (66), Expect = 0.14
Identities = 32/131 (24%), Positives = 48/131 (36%)
Frame = +3
Query: 117 IKEYIMSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNS 296
++E + SGP LV D G LR G+ E PK +V
Sbjct: 6 VREPVFSGPTPSFQNVSNDIPLVIDNGSWQLRAGWGGEKDPKLVFDNLVS---------- 55
Query: 297 EEKVPDGNXTQTGSKTGSELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWDLFXXMLDYC 476
+ D ++T + G++ I V + R E + NWDL +LDY
Sbjct: 56 --RYRDRKLSRTSTLVGNDT--LIEVGSRSIARSPFERNV------ISNWDLMEQVLDYT 105
Query: 477 YSKVIRSPSEH 509
+ K+ EH
Sbjct: 106 FLKLGIDRMEH 116
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 249 IPAVVGVGPATHIPNSEEKVPDGNXTQTGSKTGSELRHYIXVTELHVPRPGMEVQTYMKD 428
+P+ +G A + V DG+ TG + +RH + V + G ++ + D
Sbjct: 425 VPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHD 484
Query: 429 G---QVDNWD 449
G ++ NWD
Sbjct: 485 GPYNRIQNWD 494
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 2.2
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +3
Query: 180 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNXTQTGSKTGSELR 359
+ D G ++ G+A +D PK P VG H E +P + Q GSE +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTC--VGRIKH----ERVMP--SSIQKDMFVGSEAQ 63
Query: 360 HYIXVTELHVPRPGMEVQTYMKDGQVDNWDLFXXMLDYCYS-KVIRSPSEHHP 515
+ R +++Q ++ G + NW + Y YS + + + E HP
Sbjct: 64 NL---------RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 237 PKADIPAVVGVGPATHIPNSEEKVPD 314
PKAD+ +V VG +T IP + V D
Sbjct: 329 PKADVHDIVLVGGSTRIPKVQRLVSD 354
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 362 VSQLTARFTAGLRXVAIRNLFFGIWDVXSWSDAHNCW 252
V++++ F +R + + L F IWD+ N W
Sbjct: 41 VNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFW 77
>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 125
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 356 QLTARFTA-GLRXVAIRNLFFGIWDVXSWSDAHNCWYISFWGILLXITNSQRMMTRIKD* 180
Q+T+ + L+ A ++ ++ V D Y+SF G+L+ I S R + R+
Sbjct: 58 QITSNLNSPDLKEAADYIMYGKVYRVEEAKDEKVSVYVSFGGLLMAIEGSHRKLYRLSLD 117
Query: 179 CTYLV 165
YL+
Sbjct: 118 HVYLL 122
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 92 KIKFLQ*HYKRIYYEWPERHAVRGRRDRCTSL 187
KIK LQ H+K++ W E A R DR T +
Sbjct: 123 KIKRLQSHWKQVLGRWEENIA---RVDRLTEI 151
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 276 ATHIPNSEEKVPDGNXTQTGSKTG 347
A H+ N PDG TGS TG
Sbjct: 80 ARHVINVVRWTPDGRRLLTGSSTG 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,888
Number of Sequences: 5004
Number of extensions: 40475
Number of successful extensions: 123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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