Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j05
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    95   4e-20
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    38   0.003
Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...    37   0.007
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...    37   0.007
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.        37   0.007
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.        37   0.007
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.        37   0.007
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...    37   0.007
J01044-1|AAA27889.1|   86|Caenorhabditis elegans protein ( C.ele...    37   0.007
J01042-1|AAA27887.1|   86|Caenorhabditis elegans protein ( C.ele...    37   0.007
Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    36   0.017
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        36   0.017
J01046-1|AAA27890.1|   86|Caenorhabditis elegans protein ( C.ele...    36   0.017
J01043-1|AAA27888.1|   83|Caenorhabditis elegans protein ( C.ele...    36   0.017
Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical pr...    30   0.85 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   0.85 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   0.85 
U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    29   2.0  
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    29   2.0  

>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
 Frame = +3

Query: 144 NGMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNX 323
           +G +YGGDE+  LVFD G  S RVG+A E+ PK DIP+ + V  A      E++      
Sbjct: 2   SGAVYGGDEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEG 61

Query: 324 TQTGSKTGSELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWDLFXXMLDYCYSKVIRS-P 500
             +  +T  E   +I  T++ VPR    ++++MK+G +++W+LF  ++++ Y  ++ S P
Sbjct: 62  DNSKVQTKREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNP 121

Query: 501 SEH 509
           SEH
Sbjct: 122 SEH 124


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 29/115 (25%), Positives = 48/115 (41%)
 Frame = +3

Query: 168 EIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNXTQTGSKTG 347
           ++ A V D G    ++GYA    P+  IP+ + V       NS+  +   N    G    
Sbjct: 5   QLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQA-MRWNNRVGAGI--- 60

Query: 348 SELRHYIXVTELHVPRPGMEVQTYMKDGQVDNWDLFXXMLDYCYSKVIRSPSEHH 512
            +L  +I    L        V+  ++ G V++WDL     + C  K +R+  E H
Sbjct: 61  DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDH 115


>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>J01044-1|AAA27889.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene III, 5' end. ).
          Length = 86

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>J01042-1|AAA27887.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene I, 5' end. ).
          Length = 86

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           DE+ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           +EI ALV D G    + G+A +D P+A  P++VG
Sbjct: 3   EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 36


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           D++ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           D++ AL+ D G    + G+A +D P+A  P++VG
Sbjct: 4   DDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>J01046-1|AAA27890.1|   86|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene IV, 5' end. ).
          Length = 86

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           D++ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>J01043-1|AAA27888.1|   83|Caenorhabditis elegans protein (
           C.elegans (nematode)actin gene II, 5' end. ).
          Length = 83

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 165 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 266
           D++ ALV D G    + G+A +D P+A  P++VG
Sbjct: 4   DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 175 PISSPPYSMP---FGPLIIYSFIMLL*KFYFHLI 83
           PI +P +S+P   FG  I Y F++L   FY H I
Sbjct: 368 PICAPTFSLPRKIFGVFISYGFVLLWHGFYHHNI 401


>Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 175 PISSPPYSMP---FGPLIIYSFIMLL*KFYFHLI 83
           PI +P +S+P   FG  I Y F++L   FY H I
Sbjct: 368 PICAPTFSLPRKIFGVFISYGFVLLWHGFYHHNI 401


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 282 HIPNSEEKVPDGNXTQTGSKTGS---ELRHYIXVTELHVPRPGMEVQTYMKDGQV 437
           ++   +E V  G+    G+K      +LR++    +LH+ +PG  V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 282 HIPNSEEKVPDGNXTQTGSKTGS---ELRHYIXVTELHVPRPGMEVQTYMKDGQV 437
           ++   +E V  G+    G+K      +LR++    +LH+ +PG  V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445


>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 225 QEDTPKADIPAVVGVGPATHIP----NSEEKVPDGNXTQTG 335
           +E  PKAD+  ++ V    HIP      EE++PD N  + G
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELG 534


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 225 QEDTPKADIPAVVGVGPATHIP----NSEEKVPDGNXTQTG 335
           +E  PKAD+  ++ V    HIP      EE++PD N  + G
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELG 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,124
Number of Sequences: 27780
Number of extensions: 237587
Number of successful extensions: 520
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)