Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j05
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   10.0 

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 305 LFFGIWDVXSWSDAHNCWYISFWG 234
           L   +W    W+D +  W +S +G
Sbjct: 70  LITNLWLKLEWNDVNMRWNVSDYG 93


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 169 SSPPYSMPFGPLI 131
           SS P ++P+GP+I
Sbjct: 645 SSNPLNVPYGPVI 657


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 147 GMLYGGDEIG 176
           G++Y GDEIG
Sbjct: 381 GVVYNGDEIG 390


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 425 FHVRLHFHSRTRNVELCDVYVVSQ 354
           +H+R HF S+    E C    V++
Sbjct: 6   YHLRNHFGSKPFKCEKCSYSCVNK 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,874
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)