Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j02
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|...    30   0.29 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    28   0.89 
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   0.89 
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    28   1.2  
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.1  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    25   6.3  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   8.3  

>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 246 DEEPSSDGALREEADEMDSSGHWTRVEEIGH*D*RNPPTFQR 371
           +E P +   ++EE D+M+SS +    E+IG  D R+  T  R
Sbjct: 43  NEYPEAGPLVQEEEDDMESSSYHATQEDIGDDDSRSESTRNR 84


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 277 GKKLMKWTALATGRELRRLAIEINETHRRFNED 375
           GK L KW A+  GR+  R+A  I +T+ RF+ D
Sbjct: 382 GKNLCKWVAMKAGRQ--RVAPHI-KTYMRFSND 411


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 187 EHNMNVTRYPCMPSLVALQQMRNRLQMAHLG--KKLMKWTAL 306
           E + N+  YP +PSL A  Q +NRLQ   LG  K L ++ AL
Sbjct: 71  ESHENIRFYP-IPSLPAYLQPKNRLQFLFLGPLKVLHQFLAL 111


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 399 QEHEGRSHVLVETSVGFVNLNGQSPQLASSGQSCPFHQLLP 277
           Q H  + +V+ E +  FV   G +  L +     PFH +LP
Sbjct: 79  QRHNKQEYVVYEKNWIFVPYTGANRTLRAGNYEYPFHVMLP 119


>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 512 TLTPEIDLFVVSTLTQALASTFSSTY*FKFEQKYLPRARSMKAVRMSSLKRRWVSLISMA 333
           TLT ++ + V   L Q  +STF   Y   F +K      S      SS+K++   L S  
Sbjct: 33  TLTKDLQVQVAKELEQESSSTFRFAY--VFPRKAQNHYYSPSRTHTSSIKKKRPKLCSNI 90

Query: 332 NL 327
           NL
Sbjct: 91  NL 92


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 376 MRTAFMLLARGRYFCSNLNQYVLENVEAKACVRV 477
           +R  F +L    YFC +L QY+  + ++KA +++
Sbjct: 9   IRCTFHVLFAICYFCDHLLQYISNSRDSKAGLKI 42


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 350 KPTDVSTRTCERPSCSWLA 406
           +P D ++R C+ PS SW++
Sbjct: 52  RPNDYNSRLCKLPSKSWVS 70


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 338 LRLTKPTDVSTRTCERPSCSWLAEDTS 418
           LR+ K  + S R C   S +WL + TS
Sbjct: 275 LRIRKAHENSGRDCSITSATWLPQSTS 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,198
Number of Sequences: 5004
Number of extensions: 42963
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)