Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28j02
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 36 0.024
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 2.1
11_04_0157 + 14204812-14204926,14205231-14205424 29 3.7
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 28 4.9
04_03_0974 + 21367304-21369634 28 4.9
11_03_0038 - 9142692-9143083,9143665-9143686,9143763-9143806,914... 28 6.5
02_04_0109 + 19812544-19814474,19814574-19814607 28 6.5
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 27 8.5
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947 27 8.5
04_04_1546 - 34301905-34302093,34302549-34302911,34303031-343034... 27 8.5
03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020 27 8.5
>10_07_0130 + 13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 231 GGAAADEEPSSDGALREEADEMDSSGHWT-RVEEIGH*D*RNPPTFQRGHANGLHAPGSR 407
G A PSS LRE A +S G W E+G D R RGH N L G+R
Sbjct: 900 GAGLAPSPPSSPTWLREAALSPESGGRWAGPAVELGGGDARAAAAEPRGHGNNLRHSGAR 959
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 246 DEEPSSDGALREEADEMDSSGHW 314
DEE DGAL +E D D++G W
Sbjct: 344 DEEDDHDGALCDEDDGEDATGEW 366
>11_04_0157 + 14204812-14204926,14205231-14205424
Length = 102
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 231 GGAAADEEPSSD-GALREEADEMDSSG 308
GGAA DEEP D G +E D+ D+ G
Sbjct: 15 GGAAIDEEPIEDQGGESDEGDDEDALG 41
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 448 NVEAKACVRVETTNKSISGVKVPHMEVVELGGPPY 552
N+ +AC+ TNKS+ G + P + + PY
Sbjct: 760 NITLRACMHRLPTNKSVRGARWPELWPERMSAAPY 794
>04_03_0974 + 21367304-21369634
Length = 776
Score = 28.3 bits (60), Expect = 4.9
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
Frame = -1
Query: 572 FSNPRWLYGGPPNSTTSM*GTLTPEIDLFVVSTLTQALASTFSSTY*FK--FEQKYLPRA 399
+ +PR YG +++++ G P F + T + + +K F L A
Sbjct: 206 YDSPRDYYGHGSHTSSTAAGAAVPGASYFGYANGTATGVAPMARVAMYKAVFSADTLESA 265
Query: 398 RSMKAVRMSSLKRRWVSLISMANLLNSRPVARAVHFISFFPKCAI*RRFLICCSATNEGM 219
+ M V ++S++ P V I F A+ R L+ CSA N+G
Sbjct: 266 STDVLAAMDQAIADGVDVMSLSLGFPESPYDTNVVAIGAF--AAVRRGILVTCSAGNDGS 323
Query: 218 QGYLV 204
Y V
Sbjct: 324 DSYTV 328
>11_03_0038 -
9142692-9143083,9143665-9143686,9143763-9143806,
9143959-9144133
Length = 210
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 374 SSLKRRWVSLISMANLLNSRPVARAVHF-ISFFPKC 270
SS KRR+ ++ +LN R + VH + FFP C
Sbjct: 52 SSEKRRYGMILMYGVILNCRRTMQMVHLTVFFFPAC 87
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 243 ADEEPSSDGALREEADEMDSSG 308
A E+ SSDGAL +++DE S G
Sbjct: 123 APEQKSSDGALEKKSDEKKSDG 144
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 222 AFVGGAAADEEPSSDGALREEADEMDSSGH 311
A VGG ADE +SD + E+ + ++GH
Sbjct: 137 ALVGGGDADEAVTSDDEIYEDEGIIQNAGH 166
>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
Length = 660
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 201 RYEVSLHAFVGGAAADEEPSSDGALREEADEMDSSGHWTRVEEI 332
R+ V F GG A+ E + G EEAD +G W VEE+
Sbjct: 75 RFRVLHRRFSGGVTAENEDADGGEEEEEADAAAVAG-W--VEEL 115
>04_04_1546 -
34301905-34302093,34302549-34302911,34303031-34303471,
34304331-34304447,34304540-34304593
Length = 387
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 198 ERYEVSLHAFVGGAAADEEPSSDGALREEADEMDSSGH 311
E+ ++H F G E+P D AL D +D+S +
Sbjct: 237 EKCPTAIHDFEGDQTYSEKPGHDFALTASFDNVDASSY 274
>03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020
Length = 241
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 209 GILACLRWWRCSR*GTV--FRWRT*GRS**NGQLWPL 313
G A LRWWRCS + RWR GR G L P+
Sbjct: 102 GARAALRWWRCSSRAVLRRRRWRE-GRVPARGGLPPV 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,584
Number of Sequences: 37544
Number of extensions: 300970
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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