Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28j02
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-10|CAC51066.1|  366|Caenorhabditis elegans Hypothetical...    29   1.9  
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z66521-11|CAA91398.2|  471|Caenorhabditis elegans Hypothetical p...    29   3.3  
AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like ...    29   3.3  
AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024817-32|AAP13741.1|  543|Caenorhabditis elegans Hypothetical...    27   7.6  
AC024817-31|AAP13742.1|  563|Caenorhabditis elegans Hypothetical...    27   7.6  

>AL132948-10|CAC51066.1|  366|Caenorhabditis elegans Hypothetical
           protein Y39B6A.11 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 196 MNVTRYPCMPSLVALQQMRNRLQMAHLGK-KLMKWTALATGRELRRLAIEINETHRRFNE 372
           +N+T     P +  L+Q R     AHL +  L + + +AT  E R++ I + E H +   
Sbjct: 164 LNLTENAAEPQIDHLEQAR-----AHLSRINLTETSPIATPTEERKIDISMTENHEKLLA 218

Query: 373 DMR 381
           +MR
Sbjct: 219 EMR 221


>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
           protein F23H12.6 protein.
          Length = 1025

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 513 NFDAGDRFVCSFNSNASLSLNILQHVLI*VRTEVSSASQEHEGRSHVLVE 364
           N D  ++ + + NS  S S N++ HV   +    SS   E + R   LVE
Sbjct: 766 NIDMVNKLMKNMNSGRSGSANLMDHVFSVLEKHASSLEDEVQERMKELVE 815


>Z66521-11|CAA91398.2|  471|Caenorhabditis elegans Hypothetical
           protein W02B12.7 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 423 RTEVSSASQEHEGRSHVLVETSVGFVNLNGQSPQ 322
           R+  S+AS EH  RSH + +  V   N +G+  Q
Sbjct: 325 RSVASTASNEHSSRSHAIFQIFVDGQNASGEMVQ 358


>AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 605

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 423 RTEVSSASQEHEGRSHVLVETSVGFVNLNGQSPQ 322
           R+  S+AS EH  RSH + +  V   N +G+  Q
Sbjct: 459 RSVASTASNEHSSRSHAIFQIFVDGQNASGEMVQ 492


>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 178 DEDEHNMNVTRYPCMPSLV 234
           DED HN+N   Y CM  LV
Sbjct: 198 DEDGHNINSAHYRCMMELV 216


>AC024817-32|AAP13741.1|  543|Caenorhabditis elegans Hypothetical
           protein Y54G2A.17a protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 492 FVCSFNSNASLSLNILQHVLI*VRTEVSSASQE 394
           F+CSF+S A L + +L H +   + ++   S E
Sbjct: 210 FICSFSSPAELKVRLLNHKITNEKADLFQISME 242


>AC024817-31|AAP13742.1|  563|Caenorhabditis elegans Hypothetical
           protein Y54G2A.17b protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 492 FVCSFNSNASLSLNILQHVLI*VRTEVSSASQE 394
           F+CSF+S A L + +L H +   + ++   S E
Sbjct: 230 FICSFSSPAELKVRLLNHKITNEKADLFQISME 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,308
Number of Sequences: 27780
Number of extensions: 251278
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)